Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001211-TA|BGIBMGA001211-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(1049 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 56 2e-08
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 50 1e-06
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 48 9e-06
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 37 0.017
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.64
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.84
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 30 1.9
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 29 2.6
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 29 2.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 29 2.6
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 2.6
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa... 29 3.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 4.5
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 28 5.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 5.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 5.9
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 28 7.8
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 7.8
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 19/85 (22%)
Query: 279 KRSAHNAIERRYRTSINDRIVELK----------NMLVGEEAK---------LNKSAILR 319
KRSAHN IE+RYR+++ND+I EL+ N +E K LNK+ IL
Sbjct: 427 KRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKGTYVPLSRKLNKATILS 486
Query: 320 KTIEYIKYLRSQNTRLKQENIALKQ 344
K EYIK L+S+N +L +EN L++
Sbjct: 487 KATEYIKSLQSKNKKLIEENKILQK 511
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 28/110 (25%)
Query: 279 KRSAHNAIERRYRTSINDRIVELK---------------NMLVGEE-------AKLNKSA 316
K++AHN IE+RYRT++NDRI EL+ N L E+ KLNK
Sbjct: 261 KKTAHNMIEKRYRTNLNDRICELRDAVPSLRAAAALRCGNSLDDEDLGGLTPARKLNKGT 320
Query: 317 ILRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTPPHSD 366
IL K EYI++L ++N L++ N KQ+ + E + PP +D
Sbjct: 321 ILAKATEYIRHLEAKNKELQKTN---KQLSDRLAFYE---DPSMAPPSND 364
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 268 PNIGPPKVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKY 327
P +G + + KR +H +ERR R +I++ I EL N++ G E NK +IL++T +YI+
Sbjct: 78 PCVGSEEWYKAKRLSHKEVERRRREAISEGIKELANIVPGCEK--NKGSILQRTAQYIRS 135
Query: 328 LRSQNTRLKQEN 339
L+ ++++
Sbjct: 136 LKEMEEMCREKS 147
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 271 GPPKVKEVKRSAHNAIERRYRTSINDRIVELKNML-VGEEAKLNKSAILRKTIEYIKYLR 329
GP R++H ER+ R I + +LK+ L + + K +K +L + I+YI+ L+
Sbjct: 327 GPYTRNPELRTSHKLAERKRRKEIKELFDDLKDALPLDKSTKSSKWGLLTRAIQYIEQLK 386
Query: 330 SQNTRLKQENIALKQVCQKS 349
S+ L+ +L++ Q +
Sbjct: 387 SEQVALEAYVKSLEENMQSN 406
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 277 EVKRSAHNAIE-RRYRTSINDRIVELKNMLVGEEA-KLNKSAILRKTIEYIKYL------ 328
E+K+ ++ E R N+ + ++N+L E A L+K ILR+T E + +
Sbjct: 839 ELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDKEEILRRTQERLANIEDSFSE 898
Query: 329 -RSQNTRLKQENIALKQV 345
+ QN L++E+ +LKQ+
Sbjct: 899 TKQQNENLQRESASLKQI 916
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 74 PISKTIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQ-VQNQPMIFQQVVQSPVFVNL 132
P ++ Y+ +K + + + ASV T+ + +P+I Q ++ P ++L
Sbjct: 378 PFIQSTLADYVSSDKISKNVNADEASVKGAAFYGASLTKSFRVKPLIVQDIINYPYLLSL 437
Query: 133 GPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLKQQSQPL 170
G + I +PD +Q NV N ++ K S PL
Sbjct: 438 GTSEYIVALPDSTPYGMQ-HNVTIHNVSTIGKHPSFPL 474
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 173 QNNPKGVPF-ILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGS 231
+++P+ + F I KSS N + S +N K Y+S P +SS + K S
Sbjct: 103 ESHPREIEFSIQKSSKINLHTL---SQFVNSK-----YSSDPQVLSSIMFLDLLLKKKPS 154
Query: 232 ETTP--IHTFFTNSNGTTLLTGIPA 254
ET +H+FFT NG +L G+ A
Sbjct: 155 ETLFGFMHSFFTGENGVSLGGGVEA 179
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 127 PVFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLKQQSQPLLIQNNPKGVPFILKSS 186
P+ + A + PD++ N V N PQ P +S P +N + P S
Sbjct: 248 PISPAISCASSCPSTPDEQKNFFIVGNAPQQTPARP-SLRSVPSYPSSNNQRRP--SASR 304
Query: 187 DSNFSPVLLQSNIINP 202
+FS + SN++NP
Sbjct: 305 VRSFSNYVKSSNVVNP 320
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 303 NMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTP 362
N V ++ +++A KT IKY+ S + + +IA + QK+ + P +
Sbjct: 514 NSKVQTTSRASENADTNKTQHNIKYIDSY---VPEYSIARQSANQKTNEQHPSSTSLHQQ 570
Query: 363 PHSDVSSP-YHSPHSIDSDTP 382
SD+ SP +H ++D DTP
Sbjct: 571 STSDLKSPSFHENSNVD-DTP 590
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 185 SSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSS-TNQNIITNAKAGS--ETTPIHTFFT 241
S+ S +S + ++ + +S + SS T N+I ++ S +TP+ T ++
Sbjct: 85 STSSEYSSSSIPITTVSSSDSFIPSSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYS 144
Query: 242 NSNGTTLLT 250
++GTT ++
Sbjct: 145 GTSGTTFVS 153
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 112 QVQNQPMIFQQVV-----QSPVFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLK-- 164
Q+ +QP++ + +V + P + L + P++ S ++ V KTSP+K
Sbjct: 503 QIFSQPVLSKYIVGLDPKKLPKILELSKDITVNAHPNQPSRP-RLPRVASPLKTSPVKLA 561
Query: 165 --QQSQPLLIQNNPKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQN 222
Q+ L +NP +S + SP + + ++ + S+ L+ S++
Sbjct: 562 VTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSK 621
Query: 223 IITNAKAGSETTP 235
++NA + ++ P
Sbjct: 622 GVSNAASSKQSFP 634
>SPAC24H6.02c |||TIM23 translocase complex subunit
Tim15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 240 FTNSNGTTLLTGIPAVVLEGDKIALNPAPNIGPPKVKEVKRSAHNAIERRY 290
FT S+ L +G+P+V + D++ P N+ RS HN ++ Y
Sbjct: 48 FTQSDAKDLASGVPSVKSDADQLQPKPTYNVSFTCTVCNTRSNHNFSKQAY 98
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 291 RTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALKQ 344
R S D + ++ L + KL K +LR TI +K R+ N++L++E + LK+
Sbjct: 327 RISEFDNLKSERDTLSIKNEKLEK--LLRNTIGSLKDSRTSNSQLEEEMVELKE 378
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 700 YDSDHPPAKLFSRLPDPADPLAYAMRAYHLEILQRSLQMLLCADERTNTRDV 751
Y + PP KL RLP L + LE ++ L + +C D+ N DV
Sbjct: 953 YANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDD-ANGEDV 1003
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 28.3 bits (60), Expect = 5.9
Identities = 59/266 (22%), Positives = 100/266 (37%), Gaps = 28/266 (10%)
Query: 2 EGRDFLNNCDGDFMTKLEQELTFVDNTNETGLLDIDTKCKPE--ISSSPQVSP----NYN 55
E + NN D ++ + +DNT+E L+ +K E I S V + N
Sbjct: 338 EAVEIANNVKEDIVSTANDDANELDNTSEKATLETSSKPVTEQAIEQSEVVQEVEEGDTN 397
Query: 56 HTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKF-NLPTSLENASVTFPEVIPQQRTQVQ 114
T N ++ I S T EKF +P+ E S T + +Q +
Sbjct: 398 MTTNTILKPTDEIINKGYAYSITSSHSNHSNEKFEQIPSPDEKLSRTDIDTHVKQLQTTK 457
Query: 115 NQPMIFQQVVQSP-------VFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKT------S 161
+ + V+SP + +L I +K N+ + ++ P + S
Sbjct: 458 STDSLSIPFVESPQQNPEEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSVNSPFLYS 517
Query: 162 PLKQQSQPLLIQNNPKGVPFILKSSDSNFSPV----LLQSNIINPKTQTLMYTSTPLQVS 217
P KQ S L + + + L+ SD + L Q+N N + +T+ + Q
Sbjct: 518 PSKQPSGEL----DEENLKLRLQDSDVDDEVATIRSLKQNNATNSEVETVTNDPSFSQQP 573
Query: 218 STNQNIITNAKAGSETTPIHTFFTNS 243
T+ I+ N A S I F++S
Sbjct: 574 GTHSRILRNFDAISSIDSIPDSFSDS 599
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 834 YSLAQCRDERS---VERTSETILKVCDLAGARLADSLAYYCCRKP--TQLMMLMQVLCCD 888
+S+ C +E + VE S+TI K+C L G + C K +LM Q L D
Sbjct: 181 FSIESCNEEWTSTFVETESQTIYKLCSLRGFGIYSDETAECIDKTDINELMNTFQALITD 240
Query: 889 W 889
+
Sbjct: 241 F 241
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.9 bits (59), Expect = 7.8
Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 18/223 (8%)
Query: 45 SSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPE 104
++SP++ +NH PV+ + S++ G + L S TFP+
Sbjct: 173 TASPKLGSPFNHINRPVLDRSPSSFSQ----SRSAVSGNMNPGVGTLQQPQRAGSDTFPD 228
Query: 105 VIPQQRTQVQNQPMIFQ------QVVQSPVFVNLGPAGNIQP--MPDKRSNVIQVDNVPQ 156
+ Q +P + +++ S + G + I S V QVDN+
Sbjct: 229 LNTSSSNQPGGEPNVASANTHSLEILSSSAYHPSGSSNGISAGLTQSVASPVGQVDNLAD 288
Query: 157 VNKTSPLKQQSQPLLIQNN-PKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQ 215
++ SPL++ +N P G ++ +D SP+ + + K S P+
Sbjct: 289 FSQ-SPLRRGPSRFPTNSNVPVGNSMSIRDTD---SPLNILVDKAKAKASIKENASQPVA 344
Query: 216 VS-STNQNIITNAKAGSETTPIHTFFTNSNGTTLLTGIPAVVL 257
S S ++ N+ A + + F + + L + IP +L
Sbjct: 345 PSASQREHSAVNSPAAAMSPSTAMFSSEAFPQHLASLIPPALL 387
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 45 SSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPE 104
S SP SP H V + T I PT P+ + + +EEK L E A+ E
Sbjct: 140 SKSPIPSPETIHKNIDVEEKET--IEPTTPVKEVETTAHAEEEKGPLTPDSEYAARQLTE 197
Query: 105 VIPQQRTQ 112
+ + +Q
Sbjct: 198 ELANKSSQ 205
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,696,418
Number of Sequences: 5004
Number of extensions: 199421
Number of successful extensions: 608
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 25
length of query: 1049
length of database: 2,362,478
effective HSP length: 80
effective length of query: 969
effective length of database: 1,962,158
effective search space: 1901331102
effective search space used: 1901331102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -