GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001211-TA|BGIBMGA001211-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (1049 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    33   0.052
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    29   0.84 
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    25   7.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 255 VVLEGDKIALNPAPNIGPPKVK-EVKRSAHNAIERRYR-TSINDRIVELKNMLVGEEAKL 312
           VVLE  +  L  A  +G    + + K +  N I++  +  +++D + +L+  +  +E ++
Sbjct: 290 VVLEEKQSNLESAGRMGELLSELQAKLAWRNVIDQEEQLAAVDDELKKLRTSIEEQEHRI 349

Query: 313 -NKSAILRKTIEYIKYLRSQNTRLKQENIALKQ 344
            N+ A++ KT   I   R+     KQE +ALK+
Sbjct: 350 RNREALVAKTDSTIDTYRADIESKKQEYVALKE 382


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
            transcription factor FRU-MB protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 980  ALEGGGGDGERAVALYMAGKHLPA--AVLAAPGERAGMLAQAA 1020
            +L GGGG G  +    M G H  A  A +AA G  AGM++  A
Sbjct: 675  SLGGGGGSGRSSSGGGMIGMHSVAAGAAVAAGGGVAGMMSTGA 717


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 35  DIDTKCKPEISSSPQVSPNYNHTGNPV--MSQHTHRIRPTPPISKT 78
           D+ +   P  SSSPQ++P      +P   M + +++ +P P  ++T
Sbjct: 169 DMSSPGAPTGSSSPQITPRPTPVKSPYEWMKKQSYQSQPNPGKTRT 214


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,070,473
Number of Sequences: 2123
Number of extensions: 43921
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 4
length of query: 1049
length of database: 516,269
effective HSP length: 71
effective length of query: 978
effective length of database: 365,536
effective search space: 357494208
effective search space used: 357494208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)