Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001211-TA|BGIBMGA001211-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(1049 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 48 4e-05
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr... 46 1e-04
At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family pr... 44 7e-04
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 42 0.002
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 42 0.003
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 42 0.003
At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family pr... 41 0.004
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 40 0.007
At4g09180.1 68417.m01519 basic helix-loop-helix (bHLH) family pr... 38 0.035
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 38 0.035
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 38 0.035
At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family pr... 38 0.035
At1g35460.1 68414.m04398 basic helix-loop-helix (bHLH) family pr... 38 0.035
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 38 0.047
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 38 0.047
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr... 37 0.062
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 37 0.081
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 37 0.081
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr... 36 0.11
At5g67060.1 68418.m08455 basic helix-loop-helix (bHLH) family pr... 36 0.11
At3g50330.1 68416.m05504 basic helix-loop-helix (bHLH) family pr... 36 0.11
At5g65640.1 68418.m08257 basic helix-loop-helix (bHLH) family pr... 36 0.14
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 36 0.19
At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family pr... 36 0.19
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 36 0.19
At4g36060.2 68417.m05134 basic helix-loop-helix (bHLH) family pr... 36 0.19
At4g36060.1 68417.m05133 basic helix-loop-helix (bHLH) family pr... 36 0.19
At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family pr... 36 0.19
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 36 0.19
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 36 0.19
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 35 0.25
At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family pr... 35 0.33
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr... 35 0.33
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr... 34 0.43
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr... 34 0.43
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 34 0.57
At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr... 34 0.57
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 34 0.57
At5g65320.1 68418.m08217 basic helix-loop-helix (bHLH) family pr... 33 0.76
At5g57780.1 68418.m07223 expressed protein similar to unknown pr... 33 0.76
At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family pr... 33 0.76
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 33 0.76
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 33 0.76
At1g78370.1 68414.m09133 glutathione S-transferase, putative sim... 33 0.76
At1g30750.1 68414.m03758 expressed protein 33 0.76
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 33 1.0
At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family pr... 33 1.3
At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family pr... 33 1.3
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 33 1.3
At4g32500.1 68417.m04626 potassium channel protein, putative sim... 32 1.8
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 32 1.8
At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family pr... 32 1.8
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 32 2.3
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 32 2.3
At3g21330.1 68416.m02694 basic helix-loop-helix (bHLH) family pr... 32 2.3
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 32 2.3
At2g45280.1 68415.m05636 DNA repair family protein contains simi... 31 3.1
At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family pr... 31 3.1
At2g28130.1 68415.m03417 expressed protein 31 3.1
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p... 31 3.1
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 31 3.1
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 31 3.1
At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si... 31 3.1
At5g47430.1 68418.m05844 expressed protein 31 4.0
At3g20640.1 68416.m02612 ethylene-responsive protein -related co... 31 4.0
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 31 4.0
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr... 31 4.0
At4g21340.1 68417.m03083 ethylene-responsive protein-related con... 31 5.3
At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family pr... 31 5.3
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 31 5.3
At1g53680.1 68414.m06108 glutathione S-transferase, putative sim... 31 5.3
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi... 31 5.3
At5g19900.1 68418.m02368 PRLI-interacting factor, putative stron... 30 7.1
At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containi... 30 7.1
At1g78380.1 68414.m09134 glutathione S-transferase, putative sim... 30 7.1
At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr... 30 7.1
At1g12380.1 68414.m01431 expressed protein 30 7.1
At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family pr... 30 7.1
At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family pr... 30 7.1
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 30 9.3
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 30 9.3
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 47.6 bits (108), Expect = 4e-05
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 258 EGDKIALNPAPNI--GPPKVKEVKR----SAHNAIERRYRTSINDRIVELKNMLVGEEAK 311
EG + ++ AP+ GP KR HN E+R R+ IN+++ L++ L+ K
Sbjct: 171 EGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQS-LIPNSNK 229
Query: 312 LNKSAILRKTIEYIKYLRSQNTRLKQEN-IALKQVCQKSGVKEPIFEGGYTPPHSDVSSP 370
+K+++L + IEY+K L+ Q L N I L +C P+ PP + + P
Sbjct: 230 TDKASMLDEAIEYLKQLQLQVQMLTMRNGINLHPLCLPGTTLHPLQLSQIRPPEA-TNDP 288
Query: 371 YHSPHSIDSDTPSSPE 386
+ + + T ++PE
Sbjct: 289 LLNHTNQFASTSNAPE 304
>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 409
Score = 46.4 bits (105), Expect = 1e-04
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 280 RSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
RS H+A E+R R+ INDR L+ ++ + K +K++ L + IEYI++L+ +
Sbjct: 158 RSKHSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEK 209
>At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 314
Score = 43.6 bits (98), Expect = 7e-04
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 201 NPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTPIHTFFTNSNGTTLLTGIPAVVLEGD 260
N T S+ S +I+ ++T P+ T SN ++ V
Sbjct: 54 NNMNSTSSSPSSSSSSGSRTSQVISFGSPDTKTNPVETSLNFSNQVSM----DQKVGSKR 109
Query: 261 KIALNPAPNIGPPKVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRK 320
K +N P +KE H ER+ R +N+R++ L +L G + K +K+ +L
Sbjct: 110 KDCVNNGGRREPHLLKE-----HVLAERKRRQKLNERLIALSALLPGLK-KTDKATVLED 163
Query: 321 TIEYIKYLRSQNTRLKQENIALKQVCQ 347
I+++K L+ + +L++E + K++ Q
Sbjct: 164 AIKHLKQLQERVKKLEEERVVTKKMDQ 190
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 279 KRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQE 338
++S E+ R +N+ VEL N+L E K +K+ IL T++ +K L S+ +LK E
Sbjct: 6 RKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSE 65
Query: 339 NIAL 342
AL
Sbjct: 66 YTAL 69
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 41.5 bits (93), Expect = 0.003
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENI 340
HN ER+ R IN R+ L+ LV +K +K+++L + IEY+K L++Q + + + N+
Sbjct: 218 HNQSERKRRDKINQRMKTLQK-LVPNSSKTDKASMLDEVIEYLKQLQAQVSMMSRMNM 274
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 280 RSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
RS H+ E+R R+ IN+R L+ ++ E K + ++ L + I+Y++YL+ +
Sbjct: 47 RSKHSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEK 98
>At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family
protein
Length = 318
Score = 41.1 bits (92), Expect = 0.004
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 258 EGDKIALNPAPNIGPPKVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAI 317
+GD + N G K K RS ERR R + D++ L++ LV K++K++I
Sbjct: 108 DGDDSSATTTNNDGTRKTK-TDRSRTLISERRRRGRMKDKLYALRS-LVPNITKMDKASI 165
Query: 318 LRKTIEYIKYLRSQNTRLKQENIALK-QVCQKSGVKEPIFEGGYTPPHSDVSSP 370
+ + Y++ L+SQ +LK + L+ + G +E + T P ++ P
Sbjct: 166 VGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQEHAPDAQKTQPFRGINPP 219
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 287 ERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALKQVC 346
ERR R +NDR+ L++ LV KL++++IL I Y+K L+++ L+ E +
Sbjct: 319 ERRRRKKLNDRLYALRS-LVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSET- 376
Query: 347 QKSGVKEPIFEGGYTPPHSDVSSPYHSPHSIDSDTPS 383
+ G P +GG + + V + +H S +S+ PS
Sbjct: 377 -EDGSNRP--QGGMS-LNGTVVTGFHPGLSCNSNVPS 409
>At4g09180.1 68417.m01519 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 262
Score = 37.9 bits (84), Expect = 0.035
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 287 ERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQE 338
ER RT I+DRI +L+ ++ + + N + +L + +EY+K L+ Q L +E
Sbjct: 199 ERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEE 250
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 37.9 bits (84), Expect = 0.035
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 182 ILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTPIHTFFT 241
+ + +D S + N K + + T+ ++++ T+ ++++ ++ E T +
Sbjct: 193 LTRRTDGTDSSAVAGGGAYNRKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKR 252
Query: 242 NSNGTTLLTGIPAVVLEGDKIALNPAPNIGPPKVKEVKRSAHNAIERRYRTSINDRIVEL 301
T T E K A + + EV HN ER+ R IN+R+ L
Sbjct: 253 KEREATT-TDETESRSEETKQARVSTTSTKRSRAAEV----HNLSERKRRDRINERMKAL 307
Query: 302 KNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
+ L+ K +K+++L + IEY+K L+ Q
Sbjct: 308 QE-LIPRCNKSDKASMLDEAIEYMKSLQLQ 336
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 37.9 bits (84), Expect = 0.035
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 182 ILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTPIHTFFT 241
+ + +D S + N K + + T+ ++++ T+ ++++ ++ E T +
Sbjct: 122 LTRRTDGTDSSAVAGGGAYNRKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKR 181
Query: 242 NSNGTTLLTGIPAVVLEGDKIALNPAPNIGPPKVKEVKRSAHNAIERRYRTSINDRIVEL 301
T T E K A + + EV HN ER+ R IN+R+ L
Sbjct: 182 KEREATT-TDETESRSEETKQARVSTTSTKRSRAAEV----HNLSERKRRDRINERMKAL 236
Query: 302 KNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
+ L+ K +K+++L + IEY+K L+ Q
Sbjct: 237 QE-LIPRCNKSDKASMLDEAIEYMKSLQLQ 265
>At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 368
Score = 37.9 bits (84), Expect = 0.035
Identities = 16/59 (27%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 282 AHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENI 340
+H+ ERR R IN+ + +L+++L K +K+++L + I+++K L+ + + + + N+
Sbjct: 177 SHSEAERRRRERINNHLAKLRSIL-PNTTKTDKASLLAEVIQHVKELKRETSVISETNL 234
>At1g35460.1 68414.m04398 basic helix-loop-helix (bHLH) family
protein similar to GI:6166283 from [Pinus taeda]
Length = 259
Score = 37.9 bits (84), Expect = 0.035
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 287 ERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQE 338
ER RT I+DRI L+ ++ + + N + +L + +EY+K L+SQ L ++
Sbjct: 196 ERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQ 247
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 37.5 bits (83), Expect = 0.047
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
HN ERR R IN+R+ L+ L+ +K +K++IL + I+Y+K L+ Q
Sbjct: 262 HNLSERRRRDRINERMKALQE-LIPHCSKTDKASILDEAIDYLKSLQLQ 309
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 37.5 bits (83), Expect = 0.047
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
HN ERR R IN+R+ L+ L+ +K +K++IL + I+Y+K L+ Q
Sbjct: 262 HNLSERRRRDRINERMKALQE-LIPHCSKTDKASILDEAIDYLKSLQLQ 309
>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 458
Score = 37.1 bits (82), Expect = 0.062
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 279 KRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYL 328
++S + ER R NDR +LKN L+ K+++++I+ + I+YIK L
Sbjct: 244 RKSRTSPTERERRVHFNDRFFDLKN-LIPNPTKIDRASIVGEAIDYIKEL 292
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 36.7 bits (81), Expect = 0.081
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
HN ERR R IN+R+ L+ L+ ++ +K++IL + I+Y+K L+ Q
Sbjct: 261 HNLSERRRRDRINERMKALQE-LIPHCSRTDKASILDEAIDYLKSLQMQ 308
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 36.7 bits (81), Expect = 0.081
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
HN ERR R IN+R+ L+ L+ ++ +K++IL + I+Y+K L+ Q
Sbjct: 261 HNLSERRRRDRINERMKALQE-LIPHCSRTDKASILDEAIDYLKSLQMQ 308
>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 210
Score = 36.3 bits (80), Expect = 0.11
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 276 KEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
+ + HN E++ R+ IN+++ L+ L+ K +K+++L + IEY+K L+ Q
Sbjct: 91 RNIDAQFHNLSEKKRRSKINEKMKALQK-LIPNSNKTDKASMLDEAIEYLKQLQLQ 145
>At5g67060.1 68418.m08455 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 241
Score = 36.3 bits (80), Expect = 0.11
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 242 NSNGTTLLTGIPAV--VLEGDKIALNPAPNIGPPKVKEVK--RSAHNAIERRYRTSINDR 297
N+NGT + + + I ++P + PPK + V+ + + R R I++R
Sbjct: 89 NNNGTNMAAMREMIFRIAVMQPIHIDPEA-VKPPKRRNVRISKDPQSVAARHRRERISER 147
Query: 298 IVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENI 340
I L+ ++ G K++ +++L + I Y+K+L+ Q L+++ +
Sbjct: 148 IRILQRLVPGG-TKMDTASMLDEAIHYVKFLKKQVQSLEEQAV 189
>At3g50330.1 68416.m05504 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 231
Score = 36.3 bits (80), Expect = 0.11
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 269 NIGPPKVKEVK--RSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIK 326
++ PPK K V+ + + R R I++RI L+ ++ G K++ +++L + I Y+K
Sbjct: 114 SVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVK 172
Query: 327 YLRSQNTRLKQENI 340
+L+ Q L++ +
Sbjct: 173 FLKKQVQSLEEHAV 186
>At5g65640.1 68418.m08257 basic helix-loop-helix (bHLH) family
protein
Length = 351
Score = 35.9 bits (79), Expect = 0.14
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 274 KVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNT 333
K E + S + ERR R +NDR+ L++ +V + +K+++++IL I+Y+K L +
Sbjct: 170 KKLEGQPSKNLMAERRRRKRLNDRLSMLRS-IVPKISKMDRTSILGDAIDYMKELLDKIN 228
Query: 334 RLKQE 338
+L+ E
Sbjct: 229 KLQDE 233
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 35.5 bits (78), Expect = 0.19
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
HN ERR R IN R+ L+ +L +K +K +IL IE++K L++Q
Sbjct: 171 HNESERRRRDRINQRMRTLQKLL-PTASKADKVSILDDVIEHLKQLQAQ 218
>At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family
protein similar to unknown protein (pir |B71406)
Length = 234
Score = 35.5 bits (78), Expect = 0.19
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 287 ERRYRTSINDRIVELKNMLV-GEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALK 343
E++ R +ND+ +EL +L G K +K+AIL + + LR + +LK N +L+
Sbjct: 80 EKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQ 137
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 35.5 bits (78), Expect = 0.19
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 280 RSAHNAIERRYRTSINDRIVELKNMLV--GEEAKLNKSAILRKTIEYIKYLRSQ 331
RS H+ E+R R+ IN+R L +++ + K +K++ L + IEYI +L+ +
Sbjct: 35 RSKHSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKASFLLEVIEYIHFLQEK 88
>At4g36060.2 68417.m05134 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 268
Score = 35.5 bits (78), Expect = 0.19
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 276 KEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRL 335
KE S E+ R + ++ +EL N L K +K+++L TI+ +K + +Q RL
Sbjct: 24 KEAVCSQKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRL 83
Query: 336 KQENIALKQ 344
K E L Q
Sbjct: 84 KAEYETLSQ 92
>At4g36060.1 68417.m05133 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 35.5 bits (78), Expect = 0.19
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 276 KEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRL 335
KE S E+ R + ++ +EL N L K +K+++L TI+ +K + +Q RL
Sbjct: 42 KEAVCSQKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRL 101
Query: 336 KQENIALKQ 344
K E L Q
Sbjct: 102 KAEYETLSQ 110
>At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family
protein
Length = 258
Score = 35.5 bits (78), Expect = 0.19
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 278 VKRSAHNAIERRYRTSINDRIVELKNML--VGEEAKLNKSAILRKTIEYIKYLRSQNTRL 335
VK+ HNA ER R IN L++ L G+ KL+ A + ++++YI L+ Q +L
Sbjct: 76 VKKLNHNASERDRRRKINSLFSSLRSCLPASGQSKKLSIPATVSRSLKYIPELQEQVKKL 135
Query: 336 -KQENIALKQV 345
K++ L Q+
Sbjct: 136 IKKKEELLVQI 146
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 35.5 bits (78), Expect = 0.19
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
HN ERR R IN+++ L+ L+ K++K+++L + IEY+K L+ Q
Sbjct: 348 HNLSERRRRDRINEKMRALQE-LIPNCNKVDKASMLDEAIEYLKSLQLQ 395
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 35.5 bits (78), Expect = 0.19
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
HN ERR R IN+++ L+ L+ K++K+++L + IEY+K L+ Q
Sbjct: 348 HNLSERRRRDRINEKMRALQE-LIPNCNKVDKASMLDEAIEYLKSLQLQ 395
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 35.1 bits (77), Expect = 0.25
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 195 LQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTPIHTFFTNSNGTTLLTG--I 252
LQ II P+ + M + L V + ++N SET + + N++ +L
Sbjct: 174 LQFRII-PRAEESMSSGVNLSVEGGGSSSVSNPS--SETQNLFGNYPNASCVEILREEQT 230
Query: 253 PAVVL--EGDKIALNPAPNIGPPKVKEVK--RSAHNAIERRYRTSINDRIVELKNMLVGE 308
P +++ E D + N + K+ + +S + ER+ R IN + L+ +V +
Sbjct: 231 PCLIMNKEKDVVVQNANDSKANKKLLPTENFKSKNLHSERKRRERINQAMYGLR-AVVPK 289
Query: 309 EAKLNKSAILRKTIEYIKYLRSQNTRLKQENIALKQV-CQKSGVKE 353
KLNK I ++YI L + +L+ E + ++ C++ +E
Sbjct: 290 ITKLNKIGIFSDAVDYINELLVEKQKLEDELKGINEMECKEIAAEE 335
>At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor, Arabidopsis thaliana,
EMBL:AC005167
Length = 315
Score = 34.7 bits (76), Expect = 0.33
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 274 KVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNT 333
K E + S + ERR R +NDR+ L++ +V + K+++++IL I+Y+K L +
Sbjct: 143 KKLEGQPSKNLMAERRRRKRLNDRLSLLRS-IVPKITKMDRTSILGDAIDYMKELLDKIN 201
Query: 334 RLKQE 338
+L+++
Sbjct: 202 KLQED 206
>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 494
Score = 34.7 bits (76), Expect = 0.33
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 271 GPPKVKEVKRSAHNAI-ERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLR 329
G K K+ A N + ERR R +NDR+ L++ +V + +K+++++IL I+Y+K L
Sbjct: 295 GGGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRS-VVPKISKMDRASILGDAIDYLKELL 353
Query: 330 SQNTRLKQE 338
+ L E
Sbjct: 354 QRINDLHNE 362
>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 340
Score = 34.3 bits (75), Expect = 0.43
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
H ERR R IN+ + L+ +L K ++S++L IEY+K L+SQ
Sbjct: 282 HKLSERRRRQKINEMMKALQELL-PRCTKTDRSSMLDDVIEYVKSLQSQ 329
>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 413
Score = 34.3 bits (75), Expect = 0.43
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
H ERR R IN+ + L+ +L K ++S++L IEY+K L+SQ
Sbjct: 282 HKLSERRRRQKINEMMKALQELL-PRCTKTDRSSMLDDVIEYVKSLQSQ 329
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 33.9 bits (74), Expect = 0.57
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 276 KEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLR 329
KEV H+ ERR R IN + L+ +L K +K+++L +T+ Y L+
Sbjct: 1346 KEVAAKKHSDAERRRRLRINSQFATLRTIL-PNLVKQDKASVLGETVRYFNELK 1398
>At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family
protein
Length = 253
Score = 33.9 bits (74), Expect = 0.57
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 278 VKRSAHNAIERRYRTSINDRIVELKNMLVG--EEAKLNKSAILRKTIEYIKYLRSQNTRL 335
VK+ HNA ER R IN L++ L + KL+ + K+++YI L+ Q RL
Sbjct: 71 VKKLNHNASERDRRKKINTLFSSLRSCLPASDQSKKLSIPETVSKSLKYIPELQQQVKRL 130
Query: 336 --KQENIALK 343
K+E I ++
Sbjct: 131 IQKKEEILVR 140
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 33.9 bits (74), Expect = 0.57
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 269 NIGPPKVKEVKRSAHNAI-ERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKY 327
N K K+ A N + ERR R +NDR+ L++ +V + +K+++++IL I+Y+K
Sbjct: 631 NTNNNKGKKKGMPAKNLMAERRRRKKLNDRLYMLRS-VVPKISKMDRASILGDAIDYLKE 689
Query: 328 LRSQNTRLKQE 338
L + L E
Sbjct: 690 LLQRINDLHTE 700
>At5g65320.1 68418.m08217 basic helix-loop-helix (bHLH) family
protein contains similarity to bHLH DNA-binding protein
Length = 296
Score = 33.5 bits (73), Expect = 0.76
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 276 KEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLN-KSAILRKTIEYIKYLRSQNTR 334
KE +R H A+ER R +N + LK+M+ ++ N +++I+ TI Y+K L +
Sbjct: 97 KENQRMNHIAVERNRRKQMNHFLSILKSMMPLSYSQPNDQASIIEGTISYLKKLEQRLQS 156
Query: 335 LKQENIALK 343
L+ + A K
Sbjct: 157 LEAQLKATK 165
>At5g57780.1 68418.m07223 expressed protein similar to unknown
protein (emb CAB79759.1)
Length = 167
Score = 33.5 bits (73), Expect = 0.76
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 244 NGTTLLTGIPAVVLEGDKIALNPAPNIGPPKVKEVKRSAHNAIERR----YRTSINDRIV 299
NG+T+ + + G+K A P K + ++ N + R +T + R
Sbjct: 53 NGSTVWSRA-LISRSGNKTANKPMARRILKKARNRMKNRCNILRRNGNFTAKTWVRKRTD 111
Query: 300 ELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
LK+++ G E +K ++R+T++YI YLR+Q
Sbjct: 112 LLKSLVPGGELIDDKDYLIRETLDYIVYLRAQ 143
>At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 224
Score = 33.5 bits (73), Expect = 0.76
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 261 KIALNPAPNIGPPKVKEVKR-------SAHNAIERRYRTSINDRIVELKNMLVGEEAKLN 313
KIA + +I P VK+ KR + R R I++RI L+ ++ G K++
Sbjct: 101 KIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGG-TKMD 159
Query: 314 KSAILRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTPP 363
+++L + I Y+K+L+ Q RL N + + + +PP
Sbjct: 160 TASMLDEAIRYVKFLKRQ-IRLLNNNTGYTPPPPQDQASQAVTTSWVSPP 208
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 33.5 bits (73), Expect = 0.76
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQE 338
H ER+ R + R V L ++ G + K++K+++L +++IKYL+ + L+++
Sbjct: 153 HIIAERKRREKLTQRFVALSALVPGLK-KMDKASVLGDALKHIKYLQERVGELEEQ 207
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 33.5 bits (73), Expect = 0.76
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
H ERR R IN + +L+N+L +K +K+ +L K ++ ++ L+ Q
Sbjct: 71 HKEAERRRRERINSHLNKLRNVL-SCNSKTDKATLLAKVVQRVRELKQQ 118
>At1g78370.1 68414.m09133 glutathione S-transferase, putative
similar to 2,4-D inducible glutathione S-transferase
GI:2920666 from [Glycine max]
Length = 217
Score = 33.5 bits (73), Expect = 0.76
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 177 KGVPFILKSSD-SNFSPVLLQSNIINPKTQTLMYTSTPL 214
KGV F + D SN SP+LLQSN I+ K L++ P+
Sbjct: 26 KGVEFEYREEDFSNKSPLLLQSNPIHKKIPVLVHNGKPV 64
>At1g30750.1 68414.m03758 expressed protein
Length = 212
Score = 33.5 bits (73), Expect = 0.76
Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 6/140 (4%)
Query: 114 QNQPMIFQQVVQSPVFVNLGPAGNIQPMPDKRSNVIQVDNVPQVNKTSPLKQQSQPLLIQ 173
QNQP++ Q SPV N G QP+ P + + S +QPL
Sbjct: 47 QNQPILGQPSSSSPV--NQPLTGLSQPLIGFNQPSSTGLKQPILGQPSTSSSVNQPLTGI 104
Query: 174 NNPKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSET 233
N P F SS +P+L Q + + Q L + P SST N ++ + S +
Sbjct: 105 NQPL-TGFNQPSSTGLNNPILGQPSTSSSLNQPLTGFNQP---SSTGFNQPISSSSSSSS 160
Query: 234 TPIHTFFTNSNGTTLLTGIP 253
+ + FTN L+G+P
Sbjct: 161 SAQNQPFTNRLNQNNLSGVP 180
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 33.1 bits (72), Expect = 1.0
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 271 GPPKVKEVKRSAHNA-----IERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYI 325
G + + + RS NA ER+ R + R V L ++ G + K++K+++L I++I
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLK-KMDKASVLGDAIKHI 168
Query: 326 KYLR 329
KYL+
Sbjct: 169 KYLQ 172
>At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 282 AHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIA 341
+H+ ER R I++R+ L+N++ G + K+ +L + I Y++ L++Q L + +
Sbjct: 146 SHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTS 205
Query: 342 LKQVCQKSG 350
+ V G
Sbjct: 206 ISPVVYDFG 214
>At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 282 AHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIA 341
+H+ ER R I++R+ L+N++ G + K+ +L + I Y++ L++Q L + +
Sbjct: 146 SHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTS 205
Query: 342 LKQVCQKSG 350
+ V G
Sbjct: 206 ISPVVYDFG 214
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 32.7 bits (71), Expect = 1.3
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIA- 341
H+ ER R I +RI L+ LV K +++A++ + ++Y+K+LR Q L +
Sbjct: 157 HSIAERLRRERIAERIRALQE-LVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGG 215
Query: 342 -------LKQVCQKSGVKEPIFEGGYTP 362
+ + S V++ EGG TP
Sbjct: 216 AGAVAPLVTDMPLSSSVEDETGEGGRTP 243
>At4g32500.1 68417.m04626 potassium channel protein, putative
similar to potassium channel [Solanum tuberosum]
gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 880
Score = 32.3 bits (70), Expect = 1.8
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 44 ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTI 79
+S +P++ P H+ PVM+ H H PP+++ +
Sbjct: 737 VSGTPEIKPLMKHSSEPVMTHH-HSREAMPPLARAV 771
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 32.3 bits (70), Expect = 1.8
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 273 PKVKEVKRSA---HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLR 329
PKV+ + A H+ ER R I +R+ L+ LV K +K+++L + I+Y+K+L+
Sbjct: 128 PKVRARRGQATDPHSIAERLRRERIAERMKSLQE-LVPNGNKTDKASMLDEIIDYVKFLQ 186
Query: 330 SQ 331
Q
Sbjct: 187 LQ 188
>At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 198
Score = 32.3 bits (70), Expect = 1.8
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 262 IALNPAPNIGPPKVKEVKRS--AHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILR 319
+ ++PA + P + V+ S + RR R I+++I LK ++ G AK++ +++L
Sbjct: 101 VDIDPA-TVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGG-AKMDTASMLD 158
Query: 320 KTIEYIKYLRSQ 331
+ I Y K+L+ Q
Sbjct: 159 EAIRYTKFLKRQ 170
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 31.9 bits (69), Expect = 2.3
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 285 AIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
A +RR+R I+DR L++M+ G AK++ ++L + I Y+K+L++Q
Sbjct: 52 ARDRRHR--ISDRFKILQSMVPGG-AKMDTVSMLDEAISYVKFLKAQ 95
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 31.9 bits (69), Expect = 2.3
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 291 RTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRL 335
+ + DRI L+ LV K + +++L + +EYIK+L+ Q T L
Sbjct: 174 KEKLGDRITALQQ-LVSPFGKTDTASVLNEAVEYIKFLQEQVTVL 217
>At3g21330.1 68416.m02694 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 373
Score = 31.9 bits (69), Expect = 2.3
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 273 PKVKEVKRSA--HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRS 330
PK K VK S R+ R I+++I L+ ++ G K++ +++L + Y+K+LR+
Sbjct: 268 PKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGG-TKMDTASMLDEAANYLKFLRA 326
Query: 331 QNTRLKQENIALKQV---CQKSGVKEPIFEGGYTP 362
Q L+ L Q + P+F + P
Sbjct: 327 QVKALENLRPKLDQTNLSFSSAPTSFPLFHPSFLP 361
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 31.9 bits (69), Expect = 2.3
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
H+ ER R I +RI L+ LV K +++A++ + ++Y+K+LR Q
Sbjct: 155 HSIAERLRRERIAERIRSLQE-LVPTVNKTDRAAMIDEIVDYVKFLRLQ 202
>At2g45280.1 68415.m05636 DNA repair family protein contains
similarity to Swiss-Prot:O43502 DNA repair protein RAD51
homolog 3 [Homo sapiens]
Length = 363
Score = 31.5 bits (68), Expect = 3.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 544 AKYTALTAAVLRQLLQRLPFGGF-LARRAGDLWRDSPTRRATLHW 587
AK +L +L Q+ + G F LA GD W S T R L+W
Sbjct: 277 AKKFSLAVVLLNQVTTKFSEGSFQLALALGDSWSHSCTNRVILYW 321
>At2g31215.1 68415.m03812 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 129
Score = 31.5 bits (68), Expect = 3.1
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 276 KEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRL 335
K K+S ER R NDR +LKN L+ K +++I++ I YI L+ + L
Sbjct: 17 KGSKKSRTFLTERERRALFNDRFFDLKN-LIPNPTKGGEASIVQDGIVYINELQRLVSEL 75
Query: 336 K 336
K
Sbjct: 76 K 76
>At2g28130.1 68415.m03417 expressed protein
Length = 458
Score = 31.5 bits (68), Expect = 3.1
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 592 SSVSHQLAQLEILSDHRGRSERLLLALQAINLAEVAGN 629
SS++HQ+ L +L DH+ E LL +L +IN+ E + N
Sbjct: 355 SSIAHQM--LVVLLDHKDSDENLLSSLMSINVKERSCN 390
>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
protein contains Pfam profile PF00010: Helix-loop-helix
DNA-binding domain; PMID: 12679534; putative bHLH084
transcription factor
Length = 328
Score = 31.5 bits (68), Expect = 3.1
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 288 RRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENI 340
R+ R IN+R+ L++ LV K++ S +L + ++Y+K+L+ Q L +++
Sbjct: 253 RKRRERINERLRILQH-LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDL 304
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 31.5 bits (68), Expect = 3.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 291 RTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRL 335
+ ++ D+I L+ LV K + +++L++ IEYIK+L Q T L
Sbjct: 283 KENLRDQITSLQQ-LVSPFGKTDTASVLQEAIEYIKFLHDQVTVL 326
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 31.5 bits (68), Expect = 3.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 291 RTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRL 335
+ ++ D+I L+ LV K + +++L++ IEYIK+L Q T L
Sbjct: 283 KENLRDQITSLQQ-LVSPFGKTDTASVLQEAIEYIKFLHDQVTVL 326
>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
similar to kinesin heavy chain isolog GB:AAB63609
GI:2262101 from [Arabidopsis thaliana]
Length = 974
Score = 31.5 bits (68), Expect = 3.1
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 590 EVSSVSHQLAQLEILSDHRGRSERLLLALQAINLAEVAGNRQ 631
+ SS SHQ+ +L I S HR S+ + + ++N ++AG+ +
Sbjct: 222 DTSSRSHQIIRLTIQSTHRENSDCVRSYMASLNFVDLAGSER 263
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 31.1 bits (67), Expect = 4.0
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 55 NHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPE 104
+H G SQH HR R PP S+ E + NL +S+ A ++FPE
Sbjct: 736 HHRGETERSQHHHRKRSEPPSSEPPVPATKAEIENNLKSSV-FARISFPE 784
>At3g20640.1 68416.m02612 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 454
Score = 31.1 bits (67), Expect = 4.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 273 PKVKEVKRSAHNAIER-RYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
P K K A + + + + DRI L+ LV K + +++L + IEYIK+L Q
Sbjct: 328 PAAKRAKSEAASPSPAFKRKEKMGDRIAALQQ-LVSPFGKTDAASVLSEAIEYIKFLHQQ 386
Query: 332 NTRL 335
+ L
Sbjct: 387 VSAL 390
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 31.1 bits (67), Expect = 4.0
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 137 NIQPMPDKRSN--VIQVDNVPQVNKTSPLKQQS--QPLLIQNNPKGVPFILKSSDSNFSP 192
N+ P+PD SN V++V V + K PL + + L ++P + SDS SP
Sbjct: 418 NVVPVPDSTSNVPVVEVKQVEE-KKERPLSPYARYENLKPPSSPSPTASSTRKSDS-LSP 475
Query: 193 VLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNAKAGSETTPIHTFFTNSNGTTLLTGI 252
S+ T T T + S T ++ T+ + T + T + T+ + +
Sbjct: 476 GPTDSDTDKSSTVAKTVTETAVATSVTETSVATSVPETAVATSVTE--TAAPATSKMRPL 533
Query: 253 PAVVLEGD-KIALNPAP-NIGPPKVKEVK 279
+ D K +P P + GP + V+
Sbjct: 534 SPYAIYADLKPPTSPTPASTGPKEAASVE 562
>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 282 AHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLKQENIA 341
+H+ ER R IN+R+ L++++ G + + +L I+Y++ L++Q L + A
Sbjct: 114 SHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSA 173
Query: 342 LKQVCQKSGVK-EP--IFEGG 359
+ + EP IF+GG
Sbjct: 174 ASACYDLNSLDIEPTDIFQGG 194
>At4g21340.1 68417.m03083 ethylene-responsive protein-related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 301
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 272 PPKVKEVKRSAHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
P K ++ +H + + + DRI L+ LV K + +++L I+YIK+L+ Q
Sbjct: 174 PLKRPRLETPSHFPSFKVRKEKLGDRITALQQ-LVSPFGKTDTASVLHDAIDYIKFLQEQ 232
Query: 332 NT 333
T
Sbjct: 233 IT 234
>At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 252
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 291 RTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQNTRLK 336
R I+D+I L+ ++ E K+N + L ++ +YIK+L+SQ L+
Sbjct: 143 RRKISDKIRSLEKLMPWER-KMNLAMTLEESHKYIKFLQSQIASLR 187
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 30.7 bits (66), Expect = 5.3
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 283 HNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
H+ ER R I +R+ L+ LV K +K+++L + I+Y+K+L+ Q
Sbjct: 149 HSIAERLRRERIAERMKALQE-LVPNGNKTDKASMLDEIIDYVKFLQLQ 196
>At1g53680.1 68414.m06108 glutathione S-transferase, putative
similar to GI:2853219 from [Carica papaya]
Length = 224
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 177 KGVPFILKSSDS-NFSPVLLQSNIINPKTQTLMYTSTPLQVS 217
KGV F ++ D N S +LL+SN ++ K L++ +TP+ S
Sbjct: 29 KGVEFEVQEEDLWNKSELLLKSNPVHKKVPVLIHNNTPISES 70
>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 970
Score = 30.7 bits (66), Expect = 5.3
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 574 LWRDSPTRRATLHWATEVSSVSHQLAQLEILSDHRGRSERLLLALQAINLAE-----VAG 628
LW + + + + + SV H L++ E + RG SE+L L I +E V
Sbjct: 866 LWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYK 925
Query: 629 NRQLLADTYVTAALVFK 645
N ++ D + A L+ K
Sbjct: 926 NLRICVDCHNAAKLISK 942
>At5g19900.1 68418.m02368 PRLI-interacting factor, putative strong
similarity to PRLI-interacting factor A [Arabidopsis
thaliana] GI:11139262
Length = 494
Score = 30.3 bits (65), Expect = 7.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 139 QPMPDKRSNVIQVDNVPQVNKTSPLKQQSQPLLIQN 174
QP P +R N VP++ SPL QS P++ N
Sbjct: 19 QPPPQQRMNPPPPSQVPRIMNQSPLLGQSHPIMGMN 54
>At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 616
Score = 30.3 bits (65), Expect = 7.1
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 37 DTKCKPEISSSPQVSPNYNHTGNP----VMSQHTHRIRPTPP 74
D C+P + S V YN G P M Q H RP PP
Sbjct: 88 DEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPP 129
>At1g78380.1 68414.m09134 glutathione S-transferase, putative
similar to glutathione transferase GI:2853219 from
[Carica papaya]
Length = 219
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 177 KGVPFILKSSD-SNFSPVLLQSNIINPKTQTLMYTSTPLQVS 217
KGV F + D N SP+LLQ N I+ K L++ P+ S
Sbjct: 26 KGVEFEYREEDLRNKSPLLLQMNPIHKKIPVLIHNGKPVNES 67
>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 260
Score = 30.3 bits (65), Expect = 7.1
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 282 AHNAIERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYLRSQ 331
+H+ ER R IN+R+ L++M+ G + + +L + I Y++ L++Q
Sbjct: 155 SHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQ 204
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 30.3 bits (65), Expect = 7.1
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 QPLLIQNNPKGVPFILKSSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTNQNIITNA 227
+P+L++N G+P +K S V SN ++ L + P S T + IT +
Sbjct: 69 EPILVRNTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSVTPISTITPS 128
Query: 228 KAGSETTP-IHTFFTNSNGTTLLTGIPA 254
S ++P H NS+G + T IP+
Sbjct: 129 PTSSSSSPQTHHRKRNSSG-AVTTAIPS 155
>At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 30.3 bits (65), Expect = 7.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 287 ERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYL 328
ER R DR +LKN L+ K ++++I+ + I+YIK L
Sbjct: 221 ERERRVHFKDRFGDLKN-LIPNPTKNDRASIVGEAIDYIKEL 261
>At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 30.3 bits (65), Expect = 7.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 287 ERRYRTSINDRIVELKNMLVGEEAKLNKSAILRKTIEYIKYL 328
ER R DR +LKN L+ K ++++I+ + I+YIK L
Sbjct: 221 ERERRVHFKDRFGDLKN-LIPNPTKNDRASIVGEAIDYIKEL 261
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 318 LRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTPPHSDVSSP 370
LR I ++ Y+ + T K ++ + + SG + P +E GY + D SSP
Sbjct: 109 LRDFIRHV-YVNKRYTNEKNDDKSPSETRSSSGSRSPPYEDGYDRRYGDRSSP 160
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 318 LRKTIEYIKYLRSQNTRLKQENIALKQVCQKSGVKEPIFEGGYTPPHSDVSSP 370
LR I ++ Y+ + T K ++ + + SG + P +E GY + D SSP
Sbjct: 109 LRDFIRHV-YVNKRYTNEKNDDKSPSETRSSSGSRSPPYEDGYDRRYGDRSSP 160
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,700,927
Number of Sequences: 28952
Number of extensions: 1059295
Number of successful extensions: 2846
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 2828
Number of HSP's gapped (non-prelim): 85
length of query: 1049
length of database: 12,070,560
effective HSP length: 88
effective length of query: 961
effective length of database: 9,522,784
effective search space: 9151395424
effective search space used: 9151395424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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