Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001210-TA|BGIBMGA001210-PA|IPR000210|BTB,
IPR011526|Helix-turn-helix, Psq-like, IPR009057|Homeodomain-like,
IPR013069|BTB/POZ, IPR007889|Helix-turn-helix, Psq
         (516 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           26   0.55 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   5.1  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 26.2 bits (55), Expect = 0.55
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 286 HRSDRSEDAHSPYTERSFEEETPRNFHPSPP 316
           H S+ S  A S YT   + +E   N+ P  P
Sbjct: 207 HSSESSFSAASSYTNTIYHQENFENYEPKSP 237


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 307 TPRNFHP--SPPPTNFQHDVRAGLAPYVPPQQKPE 339
           TP N  P  SP     + D+   L P   P +KP+
Sbjct: 107 TPPNSEPLVSPKSEKEEKDMETTLTPCASPNRKPD 141


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 296  SPYTERSFEEETPRNFHPSPPPTNFQHDVRAGLAP 330
            +P +  ++ E  P  +HP  PPT+ +  +   L P
Sbjct: 1359 NPGSTTNYPEWQPTEWHPPIPPTSEKPPLPEELKP 1393


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,410
Number of Sequences: 317
Number of extensions: 4427
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 516
length of database: 114,650
effective HSP length: 60
effective length of query: 456
effective length of database: 95,630
effective search space: 43607280
effective search space used: 43607280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)