GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001210-TA|BGIBMGA001210-PA|IPR000210|BTB,
IPR011526|Helix-turn-helix, Psq-like, IPR009057|Homeodomain-like,
IPR013069|BTB/POZ, IPR007889|Helix-turn-helix, Psq
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    36   0.018
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   1.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   2.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   2.7  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    28   3.6  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   4.7  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   8.3  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 13/121 (10%)

Query: 324  VRAGLAPY----VPPQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLY 379
            VR+G+ P+    VP Q   E  +  Q  R   L  + C +N M+ +         +R  +
Sbjct: 1829 VRSGMRPFSLSKVPHQFDDEEGKALQIFREK-LKDLNC-KNSMNEMCIENFLMKCTRKYF 1886

Query: 380  DKVKKLGITTSRPMSRGVKREPNGAAFPYGLTGAGG-----NDEGNP--TTPLIDPSFLQ 432
            D+V+KL + T +P +    ++P+  A    L  A       ND GN    + ++DP FL+
Sbjct: 1887 DEVRKLRLGTLKPENLQFVKDPSSLALETNLLPASDTIEEKNDVGNKQVNSHILDPGFLK 1946

Query: 433  Q 433
            +
Sbjct: 1947 E 1947


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 67  AHRVVLAANSPYFQSILADV-PMDHCSILFPGVKDFEMRALLEYMYTGEVNV-TQAHIPR 124
           AH+  LAA S YF+S  + + P +H   +    K+FE  ++L Y+Y     V T+ +   
Sbjct: 180 AHKFYLAARSSYFKSKFSKLGPSEHEIEVKHFAKEFE--SILRYLYLDTNAVFTKQYNNA 237

Query: 125 IMKVAEQLEVKGLFDMTELRRQ 146
           ++ + ++ ++     + E  R+
Sbjct: 238 LLSIGKKFQLNDFIALYEKDRE 259


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 209 MLATRDTPILRNVLAQNSPVDSSQPISLVCHPVNQQSVPPRLHSNGSAHETDRASSPQRP 268
           + A +    L+   A +S    S+P +    PV  Q+ P  +H+NGS H +  + SP   
Sbjct: 278 LAAQQQQKSLQQAKANHSANVQSRPKNYPQKPV--QTTPEAVHANGSMHGSLHSKSPSPA 335

Query: 269 F 269
           F
Sbjct: 336 F 336


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 294 AHSPY-TERSFEEETPRNFHPSPPPTNF 320
           AH  Y T+ S  +ETP + HP P   NF
Sbjct: 266 AHPIYQTQHSHYDETPTSHHPDPARLNF 293


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 87  PMDHCSILFPGVKDFEMRALLEYMYTGEVNVTQAHIPRIMKVAEQLEVKGLFDMTEL 143
           P DH +    G++DF     L     G V++ Q++  R+    + LE K + DM ++
Sbjct: 187 PADHTTKDRYGIQDFNFLQTLGTGSFGRVHLVQSNHNRLYYAIKVLEKKKIVDMKQI 243


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 223 AQNSPVDSSQPISLVCHP---VNQQSVPPRLHSNGSAHETDRASSPQR 267
           +Q+ P   S+P+    HP      QS P  L+ +G   E D   SP R
Sbjct: 271 SQSQPSPYSRPLLSSVHPNLPPGSQSTPANLNQSGIHFEQDFRDSPNR 318


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 296 SPYTERSFEEETPRNFHPSPPPTNFQHDVRAGLAPYVPPQQKPEW 340
           +P T +SF     +   PSP P +F+  V      Y+P   +P++
Sbjct: 342 NPKTPQSFSTNIVQCASPSPLPLSFRSPVPNKDYEYIPSSLQPQY 386


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,930
Number of Sequences: 5004
Number of extensions: 82698
Number of successful extensions: 222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 10
length of query: 516
length of database: 2,362,478
effective HSP length: 76
effective length of query: 440
effective length of database: 1,982,174
effective search space: 872156560
effective search space used: 872156560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)