Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001210-TA|BGIBMGA001210-PA|IPR000210|BTB,
IPR011526|Helix-turn-helix, Psq-like, IPR009057|Homeodomain-like,
IPR013069|BTB/POZ, IPR007889|Helix-turn-helix, Psq
(516 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 103 4e-24
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 97 4e-22
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 41 3e-05
AB095513-1|BAC76335.1| 39|Apis mellifera brood-complex protein. 35 0.002
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 6.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 6.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 6.1
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 23 6.1
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 23 8.0
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 103 bits (247), Expect = 4e-24
Identities = 46/123 (37%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
Query: 26 QTFCLKWNHHKTNLVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILAD 85
Q +CL+WN++++N+ + L++ E +VD TL ++ + KAH+VVL+A S YFQ +L
Sbjct: 9 QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNE-ASLKAHKVVLSACSSYFQKLLLS 67
Query: 86 VPMDHCSILFPGVKDF-EMRALLEYMYTGEVNVTQAHIPRIMKVAEQLEVKGLFDMTELR 144
P H +I+ P F +++ ++E++Y GE++V+QA + ++K A+QL++KGL ++ E R
Sbjct: 68 NPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESR 127
Query: 145 RQP 147
P
Sbjct: 128 DGP 130
Score = 43.2 bits (97), Expect = 5e-06
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 344 KQYTRSDILSAIECVRN-GMSALQASRKYGVPSRTLYDKVKKLGITTSR 391
K +T+ D+ +A+E +RN MS +AS +G+PS TL+ + +LGI T +
Sbjct: 409 KSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPK 457
Score = 40.7 bits (91), Expect = 3e-05
Identities = 18/47 (38%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 346 YTRSDILSAIECVRNGMSALQ-ASRKYGVPSRTLYDKVKKLGITTSR 391
++ +D+ A+E +R+G +++Q AS ++G+P+ TLY + K+ GI SR
Sbjct: 520 WSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSR 566
Score = 37.1 bits (82), Expect = 3e-04
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 344 KQYTRSDILSAIECVRNG-MSALQASRKYGVPSRTLYDKVKKLGITTSRPMS 394
K ++ + +A++ +R G +SA +AS+ +G+PS TLY ++ GI + P +
Sbjct: 463 KSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFN 514
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 96.7 bits (230), Expect = 4e-22
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 26 QTFCLKWNHHKTNLVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILAD 85
Q FCL+WN++++++ E L E +VD TL D + + KAHRVVL+A SPYF+ +L
Sbjct: 5 QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGR-SLKAHRVVLSACSPYFRELLKS 63
Query: 86 VPMDHCSILFPGVKDFEMRALLEYMYTGEVNVTQAHIPRIMKVAEQLEVKGL 137
P H I+ V ++ AL+E++Y GEVNV Q + +K AE L V GL
Sbjct: 64 TPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGL 115
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 40.7 bits (91), Expect = 3e-05
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 337 KPEWKRYKQYTRSDILSAIECVRNG-MSALQASRKYGVPSRTLYDKVKKLGITTSRPMSR 395
+P+ +Y+ Y R ++ A+ V+ G MS +A YGVP TL KVK+ + RP R
Sbjct: 1034 RPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHL--MRPRKR 1091
Query: 396 GVKREPNGAAFPYGLTGAGGNDEGNPTT 423
K+ + +T A P T
Sbjct: 1092 DQKQSDDKTKETSTVTAAAAATNIRPGT 1119
Score = 23.0 bits (47), Expect = 6.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 210 LATRDTPILRNVLAQNSPVDSSQPISLVCHPVNQQ 244
L R+ P++ Q+S + QP+ L P N Q
Sbjct: 489 LPPREAPLVGVQPHQDSATPADQPLDLSAKPKNSQ 523
>AB095513-1|BAC76335.1| 39|Apis mellifera brood-complex protein.
Length = 39
Score = 34.7 bits (76), Expect = 0.002
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 26 QTFCLKWNHHKTNLVEILEALIKGETYVDCTLVVD 60
Q FCL+WN++++++ E L E +VD TL +
Sbjct: 5 QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 23.0 bits (47), Expect = 6.1
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 78 YFQSILADVPMDHCSILFPGVKDF 101
+F +++ +P+D+ ++F +DF
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDF 192
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.0 bits (47), Expect = 6.1
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 78 YFQSILADVPMDHCSILFPGVKDF 101
+F +++ +P+D+ ++F +DF
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDF 192
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.0 bits (47), Expect = 6.1
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 78 YFQSILADVPMDHCSILFPGVKDF 101
+F +++ +P+D+ ++F +DF
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDF 192
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 23.0 bits (47), Expect = 6.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 322 HDVRAGLAPYVPPQQKPEWKRYKQYTRSDILSAIE 356
H V +PY+ + E KRY+++ IL ++
Sbjct: 79 HQVLYQQSPYLMYENPDEEKRYQEHPNGKILRELQ 113
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.6 bits (46), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 367 ASRKYGVPSRTLYDKVKKLGI 387
+S+ YG P R L K KK G+
Sbjct: 592 SSQPYGFPERLLLPKGKKEGM 612
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.316 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,407
Number of Sequences: 429
Number of extensions: 5404
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 13
length of query: 516
length of database: 140,377
effective HSP length: 61
effective length of query: 455
effective length of database: 114,208
effective search space: 51964640
effective search space used: 51964640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)
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