Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
(423 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001891-1|AAH01891.1| 423|Homo sapiens COP9 constitutive photo... 511 e-144
AF098109-1|AAD41247.1| 423|Homo sapiens COP9 complex subunit 3 ... 511 e-144
AF031647-1|AAC14197.1| 403|Homo sapiens JAB1-containing signalo... 485 e-136
BC028119-1|AAH28119.1| 391|Homo sapiens testis expressed 9 prot... 32 4.4
DQ112785-6|AAZ01078.2| 226|Homo sapiens ATP synthase F0 subunit... 31 7.7
AY339586-6|AAP91433.1| 226|Homo sapiens ATP synthase F0 subunit... 31 7.7
AP008582-6|BAE11556.1| 226|Homo sapiens ATPase subunit 6 protein. 31 7.7
>BC001891-1|AAH01891.1| 423|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 3 (Arabidopsis)
protein.
Length = 423
Score = 511 bits (1261), Expect = e-144
Identities = 253/418 (60%), Positives = 315/418 (75%), Gaps = 13/418 (3%)
Query: 1 MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 60
MAS LEQFVN+VR +SA G L E+I KS E+L +N HL+TVL LD+Q+HSLGVLA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 VLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQP 120
VL KFS+P D T++ Q FI+ CNGE +R+ATD +A LCH LTN LVE KQP
Sbjct: 61 VLFVKFSMPS---VPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQP 117
Query: 121 IRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGNELGGIN 180
+RG+ ILK+AI K+Q+ +QLTSIHADLCQLCLL+KC KPAL +LD D+ I E G
Sbjct: 118 LRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKE-NGAY 176
Query: 181 DSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILHG 240
D+KHFL YYYYGGMIYT +KN++RALYF+E +T PAM VSHIMLE+YKKYILVSLIL G
Sbjct: 177 DAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLG 236
Query: 241 KVLPMPKYTSQVVCRFLKPLSAPYHDLVAS---------QHAASKHREIFVRDKNMGLVN 291
KV +PKYTSQ+V RF+KPLS YH+L ++ +KH E F RD NMGLV
Sbjct: 237 KVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVK 296
Query: 292 QVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMINQKDG 351
Q L+S+YKKNIQRLTKTFLTLSL D+ASRV+LSGP +AE Y+L+MIE+GEI+A INQKDG
Sbjct: 297 QCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDG 356
Query: 352 MVVFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQIQVNPQYVKKSVGSHDED 409
MV F D+PEKY +P L ++Q+M C +L + ++ MD +I VNPQ+V+KS+GS ++D
Sbjct: 357 MVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDD 414
>AF098109-1|AAD41247.1| 423|Homo sapiens COP9 complex subunit 3
protein.
Length = 423
Score = 511 bits (1261), Expect = e-144
Identities = 253/418 (60%), Positives = 315/418 (75%), Gaps = 13/418 (3%)
Query: 1 MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 60
MAS LEQFVN+VR +SA G L E+I KS E+L +N HL+TVL LD+Q+HSLGVLA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 VLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQP 120
VL KFS+P D T++ Q FI+ CNGE +R+ATD +A LCH LTN LVE KQP
Sbjct: 61 VLFVKFSMPS---VPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQP 117
Query: 121 IRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGNELGGIN 180
+RG+ ILK+AI K+Q+ +QLTSIHADLCQLCLL+KC KPAL +LD D+ I E G
Sbjct: 118 LRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKE-NGAY 176
Query: 181 DSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILHG 240
D+KHFL YYYYGGMIYT +KN++RALYF+E +T PAM VSHIMLE+YKKYILVSLIL G
Sbjct: 177 DAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLG 236
Query: 241 KVLPMPKYTSQVVCRFLKPLSAPYHDLVAS---------QHAASKHREIFVRDKNMGLVN 291
KV +PKYTSQ+V RF+KPLS YH+L ++ +KH E F RD NMGLV
Sbjct: 237 KVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVK 296
Query: 292 QVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMINQKDG 351
Q L+S+YKKNIQRLTKTFLTLSL D+ASRV+LSGP +AE Y+L+MIE+GEI+A INQKDG
Sbjct: 297 QCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDG 356
Query: 352 MVVFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQIQVNPQYVKKSVGSHDED 409
MV F D+PEKY +P L ++Q+M C +L + ++ MD +I VNPQ+V+KS+GS ++D
Sbjct: 357 MVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDD 414
>AF031647-1|AAC14197.1| 403|Homo sapiens JAB1-containing
signalosome subunit 3 protein.
Length = 403
Score = 485 bits (1195), Expect = e-136
Identities = 239/395 (60%), Positives = 299/395 (75%), Gaps = 13/395 (3%)
Query: 24 LYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLVAKFSLPPGNPEVDRSTMYQQ 83
L E+I KS E+L +N HL+TVL LD+Q+HSLGVLAVL KFS+P D T++ Q
Sbjct: 4 LCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPS---VPDFETLFSQ 60
Query: 84 FHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQLFDSQLTS 143
FI+ CNGE +R+ATD +A LCH LTN LVE KQP+RG+ ILK+AI K+Q+ +QLTS
Sbjct: 61 VQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTS 120
Query: 144 IHADLCQLCLLSKCMKPALEFLDTDVTGIGNELGGINDSKHFLLYYYYGGMIYTAMKNYD 203
IHADLCQLCLL+KC KPAL +LD D+ I E G D+KHFL YYYYGGMIYT +KN++
Sbjct: 121 IHADLCQLCLLAKCFKPALPYLDVDMMDICKE-NGAYDAKHFLCYYYYGGMIYTGLKNFE 179
Query: 204 RALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILHGKVLPMPKYTSQVVCRFLKPLSAP 263
RALYF+E +T PAM VSHIMLE+YKKYILVSLIL GKV +PKYTSQ+V RF+KPLS
Sbjct: 180 RALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNA 239
Query: 264 YHDLVAS---------QHAASKHREIFVRDKNMGLVNQVLNSMYKKNIQRLTKTFLTLSL 314
YH+L ++ +KH E F RD NMGLV Q L+S+YKKNIQRLTKTFLTLSL
Sbjct: 240 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 299
Query: 315 SDVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYASPETLCVLEQQ 374
D+ASRV+LSGP +AE Y+L+MIE+GEI+A INQKDGMV F D+PEKY +P L ++Q+
Sbjct: 300 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 359
Query: 375 MAACTKLHQYIQEMDVQIQVNPQYVKKSVGSHDED 409
M C +L + ++ MD +I VNPQ+V+KS+GS ++D
Sbjct: 360 MLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDD 394
>BC028119-1|AAH28119.1| 391|Homo sapiens testis expressed 9
protein.
Length = 391
Score = 31.9 bits (69), Expect = 4.4
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 267 LVASQHAASKHREIFVRDKNMGLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGP 326
L+ S+ H E + KN+ VN+V N ++ N R T + + L SDV + +++ P
Sbjct: 90 LLPSEGIVHLHSETKPKTKNIDPVNKVQNKLHSANKGRKTNSSVKLKYSDVQTADDVAIP 149
>DQ112785-6|AAZ01078.2| 226|Homo sapiens ATP synthase F0 subunit 6
protein.
Length = 226
Score = 31.1 bits (67), Expect = 7.7
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 184 HFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILH 239
H L++ G + + N L F +++ + + ++ +++AY +LVSL LH
Sbjct: 168 HLLMHLIGGATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLH 223
>AY339586-6|AAP91433.1| 226|Homo sapiens ATP synthase F0 subunit 6
protein.
Length = 226
Score = 31.1 bits (67), Expect = 7.7
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 184 HFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILH 239
H L++ G + + N L F +++ + + ++ +++AY +LVSL LH
Sbjct: 168 HLLMHLIGGATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLH 223
>AP008582-6|BAE11556.1| 226|Homo sapiens ATPase subunit 6 protein.
Length = 226
Score = 31.1 bits (67), Expect = 7.7
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 184 HFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILHG 240
H L++ + + N L F +++ + + ++ +++AY +LVSL LHG
Sbjct: 168 HLLMHLIGSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHG 224
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.321 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,828,508
Number of Sequences: 224733
Number of extensions: 2326169
Number of successful extensions: 7062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7046
Number of HSP's gapped (non-prelim): 7
length of query: 423
length of database: 73,234,838
effective HSP length: 92
effective length of query: 331
effective length of database: 52,559,402
effective search space: 17397162062
effective search space used: 17397162062
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 67 (31.1 bits)
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