GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
         (423 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   1.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   7.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   7.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   9.4  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 222 HIMLEAYKKYILVSLILHGK----VLPMPKYTSQVVCRFLKPL-SAPYHDLVASQH---- 272
           H+  +  K+  L     HGK    VL   KY  QVVC  L+    AP  D + +++    
Sbjct: 300 HVQKKLQKEIDLTLQENHGKISYNVLQSMKYLDQVVCESLRLWPPAPQTDRLCNKNFVIE 359

Query: 273 AASKHREIFVRDKN 286
           A+  H   F  +K+
Sbjct: 360 ASKPHERTFTVEKD 373


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 69  PPGNPEVDRSTMYQQFHDFINN 90
           PP + + + S  Y  FH F ++
Sbjct: 465 PPASVQTESSDNYNSFHQFYSS 486


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 69  PPGNPEVDRSTMYQQFHDFINN 90
           PP + + + S  Y  FH F ++
Sbjct: 413 PPASVQTESSDNYNSFHQFYSS 434


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 188 YYYYGGMIYTAMKNYDRALYFFEV 211
           Y+YY  +I+T    +   +Y+F V
Sbjct: 115 YFYYAFIIFTVHLLFLLCIYYFVV 138


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,091
Number of Sequences: 317
Number of extensions: 4228
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 423
length of database: 114,650
effective HSP length: 59
effective length of query: 364
effective length of database: 95,947
effective search space: 34924708
effective search space used: 34924708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)