GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    33   0.057
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    28   2.8  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    28   2.8  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    28   2.8  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   3.8  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    27   6.6  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   6.6  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   8.7  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    26   8.7  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   8.7  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 33.5 bits (73), Expect = 0.057
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 70  PGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADL--CHLLTNHLVEIKQPIRGLEIL 127
           PG  E+D   + Q   D ++    EQ RF  D++ DL    L  ++   IK P+  +++L
Sbjct: 137 PGTNEIDVPKVIQNILDALHEEKDEQGRFLIDIFIDLPSKRLYPDYYEIIKSPMT-IKML 195

Query: 128 KKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTD 168
           +K  +K +   + L S   DL Q+ + +K       F+  D
Sbjct: 196 EKRFKKGEY--TTLESFVKDLNQMFINAKTYNAPGSFVYED 234


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 288 GLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEE-GE-IYAM 345
           G  N+ ++ +++K+ ++ T+   TL L    SR +     + + Y+ + I+E GE +Y +
Sbjct: 447 GCRNKSMDFLFEKDWEKYTEEG-TLKLFCAFSRDQ-----EKKKYVQHSIQENGELVYNL 500

Query: 346 INQKDGMVVFLDSPEKYAS 364
           +N+KDGM     S  K  S
Sbjct: 501 LNEKDGMFFVSGSSGKMPS 519


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 153 LLSKCMKPALEFLDTDVTGIGNELGGINDSKHFLL 187
           LLS  + P ++ LD    G+  + GG++  K F++
Sbjct: 158 LLSSLIYPGMQALDEQYLGVDVQFGGVDQRKIFVM 192


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 295 NSMYKKN--IQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGM 352
           N  YKK+  ++ L   F ++S   + +R  ++    A++ +LN +E  +   +I +K  +
Sbjct: 130 NEKYKKHRTLEDLKDRFYSVSRKILLARNPINSMTAAQSSLLNTMEYNKEQEVIRKKYLI 189

Query: 353 VVFLDSPEKYASPETLCV 370
            +   +PE+ A  E L +
Sbjct: 190 GLASRTPEEVAEEEALFI 207


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/39 (25%), Positives = 25/39 (64%)

Query: 90  NCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILK 128
           N +G+++RF T+L  +  ++ +   +  +QP+ G ++L+
Sbjct: 286 NPHGKEIRFITNLSEEEKNMASKISIAFEQPVCGFDLLR 324


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 327 LQAETYILNMIEEGEIYAMINQKDGMVVFLDSP 359
           +  ETYI+N I+E   Y   N K+ M +  + P
Sbjct: 208 MMEETYIVNEIKESVCYVSQNFKEDMEICHEKP 240


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 209 FEVVVTVPAMVVSHIMLEAYKKYILVSLILHGKVLPMPKYTSQVVCRFLKPLSAP 263
           FE  + +   V+ H+   +  +Y L  +I+H   L    Y + V+      LSAP
Sbjct: 774 FEQELDLNEFVMPHLRASSSFRYRLFGVIVHSGTLNYGHYVAYVLSHKFLDLSAP 828


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 297 MYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMINQKDG 351
           +Y   + R    F+T S  +VA   E  G ++  ++ ++ I E + +     KDG
Sbjct: 207 LYLHGLNRNCPQFITASSCEVAEFAEQWGFMKVSSFFMDSIHELKAFLENASKDG 261


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 9   VNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVL 46
           + N  TM  +G F+    I+   DE  + NS++L++ L
Sbjct: 169 LKNWNTMYLAGRFQKPVVILKGEDEFYKENSYNLSSAL 206


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 108 HLLTNHLVEIKQPIRGLEILKKAIRKIQLFDS 139
           +++ +HL+ I   IRG E +   I+ IQL+++
Sbjct: 226 NVVDDHLMHITHVIRGEEWVPSTIKHIQLYEA 257


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,032
Number of Sequences: 5004
Number of extensions: 79516
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 10
length of query: 423
length of database: 2,362,478
effective HSP length: 75
effective length of query: 348
effective length of database: 1,987,178
effective search space: 691537944
effective search space used: 691537944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)