Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 252 5e-67
03_04_0215 + 18692662-18692862,18693049-18693276 33 0.57
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 31 2.3
12_02_0337 + 17709451-17710077,17710167-17710985 30 3.0
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 30 4.0
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476... 29 7.0
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636 29 9.3
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 29 9.3
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 252 bits (616), Expect = 5e-67
Identities = 164/430 (38%), Positives = 232/430 (53%), Gaps = 39/430 (9%)
Query: 5 LEQFVNNVRTMSASGN-FRDLYEIIAKSD-EVLQRNSFHLNTVLETLDIQQHSLGVLAVL 62
+E V +++ +S SG L+ ++ ++D E L+ +S L L L HSLG L +L
Sbjct: 328 VETLVAHIQGLSGSGEELAHLHNLLRQADGEPLRAHSAALLPFLAQLHPSAHSLGFLYLL 387
Query: 63 VAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIR 122
A S DF+ +C+ EQ+R A D + +C + N ++++ PIR
Sbjct: 388 EAFASSASNLRAQGGGDFLVTTADFLVSCSAEQIRLAPDKFLSVCRVFKNEVMQLNAPIR 447
Query: 123 GLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGNELGGINDS 182
G+ L+ AIRKIQ +LT IHAD LCLL+K K L L+ D+ + +
Sbjct: 448 GIAPLRAAIRKIQTSSEELTPIHADYLLLCLLAKQYKAGLSVLEDDILEV-------DQP 500
Query: 183 KHFLLYYYYGGMIYTAMKNYDRAL---------YFFEVVVTVPAMVVSHIMLEAYKKYIL 233
K LY YYGGMIY +K + AL Y F VTVP ++ I +EAYKKYIL
Sbjct: 501 KDLFLYCYYGGMIYIGLKKFTIALDFLHNCLQCYAFLQAVTVPMSSLNAIAVEAYKKYIL 560
Query: 234 VSLILHGKV-----------LP-MPKYTSQVVCRFLKPLSAPYHDLVAS---------QH 272
VSLI +G++ +P PKYTS R LK + Y DL +
Sbjct: 561 VSLIQNGQIPLLDKGESIFMVPSFPKYTSSTAQRNLKNHAQVYVDLSTCYSKGNYSELEE 620
Query: 273 AASKHREIFVRDKNMGLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETY 332
+ E F D N+GLV QVL+SMYK+NIQRLT+T+LTLSL D+AS V+L P +AE +
Sbjct: 621 YIQLNAEKFQSDNNLGLVKQVLSSMYKRNIQRLTQTYLTLSLEDIASSVQLKTPKEAEMH 680
Query: 333 ILNMIEEGEIYAMINQKDGMVVFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQI 392
+L MIE+GEI+A INQKDGMV F + PE+Y S E + ++ + L + + +D I
Sbjct: 681 VLRMIEDGEIHATINQKDGMVSFHEDPEQYKSCEMVEHIDSSIQRLMALSKKLSSIDENI 740
Query: 393 QVNPQYVKKS 402
+P Y+ K+
Sbjct: 741 SCDPAYLMKT 750
>03_04_0215 + 18692662-18692862,18693049-18693276
Length = 142
Score = 32.7 bits (71), Expect = 0.57
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 172 IGNELGGINDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVV 213
+G LG D KH + Y + M+++ +N DR L F+++++
Sbjct: 96 VGAVLGQTKDRKHHAIAYLHQRMLHSVEQNDDRVLDFWKLII 137
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 30.7 bits (66), Expect = 2.3
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 149 CQLCLLSKCMKPA-LEFLDTDVTGIGNELGGINDSKHFLLYYYYGGMIYTAMKNYDRALY 207
C CL+S + L+F D V E G D + F+ + I Y A Y
Sbjct: 706 CLTCLISLIEQSRYLQFRDCPV-----EWGWCRDLQSFIFIFKSHNRIVLERPEYGYATY 760
Query: 208 FFEVVVTVPAMVVSHIMLEAYK 229
FFE+V ++P M+ A K
Sbjct: 761 FFEIVKSLPIQWQIQRMVTAMK 782
>12_02_0337 + 17709451-17710077,17710167-17710985
Length = 481
Score = 30.3 bits (65), Expect = 3.0
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 203 DRALYFFEVVVTVPAMVVSHIMLEAYKKYIL-VSLILHG--KVLPMPKYTSQVVCRFLKP 259
+RAL+ V VPA V + AY+ ++ + HG +++PM + +VV RF+
Sbjct: 27 ERALWSKHSVHRVPA-AVKDLHPHAYRPQVVSLGPFHHGDQRLVPMEPHKLRVVARFVGR 85
Query: 260 LSAPYHDLVASQHAASKHREIFVRD 284
P + VA+ AA+ E +D
Sbjct: 86 RRRPVAEFVAAVEAAAAELEESYQD 110
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 22 RDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLVAKF 66
R + +I S+EV+Q+ F+ + +L T D+ L + V V+KF
Sbjct: 180 RQPFYMIQPSEEVVQKEKFYYHCLLITSDVSNLDLRKVKVEVSKF 224
>01_01_0633 -
4767914-4768020,4768057-4768085,4768590-4768745,
4768835-4768983,4769106-4769638,4769900-4770068,
4770255-4770347,4770641-4770698,4771392-4771471,
4771548-4771715,4772090-4772242,4772756-4772884,
4772996-4773085,4773990-4774129,4774683-4774814,
4774916-4775087
Length = 785
Score = 29.1 bits (62), Expect = 7.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 378 CTKLHQYIQEMDVQIQVNPQYVKKSVG 404
CTKL I+EM V+ V+P Y+K +G
Sbjct: 501 CTKLTSMIREMFVKKNVHPPYLKHLLG 527
>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
Length = 950
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 228 YKKYILVSLILHGKVLPMPKYTSQV 252
Y KY L SL +HGK+L +P + S +
Sbjct: 717 YSKYHLSSLKIHGKLLRLPPFFSSL 741
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 28.7 bits (61), Expect = 9.3
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 88 INNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQLFDSQLTSIHAD 147
IN +G + + + D+ H+ HL + Q G +A + ++ +S + ++ +
Sbjct: 690 INKGDGLRHKSHEENEDDVNHVDGLHLNKNNQAYHGPITRSRARKILEEVNSLVAQLNPN 749
Query: 148 LCQLCLLSKC-MKPALEFLDTDVTGIGNELGGINDSKHF 185
C+ +L KC + L F D+ +G + D+K +
Sbjct: 750 FCENFILPKCSIFVLLRFTPEDIITTPRRMGYVEDNKGY 788
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,211
Number of Sequences: 37544
Number of extensions: 442253
Number of successful extensions: 977
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 8
length of query: 423
length of database: 14,793,348
effective HSP length: 84
effective length of query: 339
effective length of database: 11,639,652
effective search space: 3945842028
effective search space used: 3945842028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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