Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.) 208 5e-54
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 35 0.14
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 30 3.1
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 30 4.1
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 30 4.1
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) 29 7.1
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5) 29 9.4
>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 852
Score = 208 bits (509), Expect = 5e-54
Identities = 117/241 (48%), Positives = 155/241 (64%), Gaps = 23/241 (9%)
Query: 166 DTDVTGIGNEL--GGINDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHI 223
D +T I +L G D+K L YYYYGGMIYTA+K ++RALYFFEV++ +P SH+
Sbjct: 592 DLQLTSIHTDLAQGSKLDAKTLLCYYYYGGMIYTALKKFERALYFFEVIINLPKF-TSHV 650
Query: 224 MLEAYKKYILVSLILHGKVLPMPKYTSQVVCRFLKPLSAPYHDLVASQHAASKHREIFVR 283
+ K +S H Y+S ++ Q +KH+E F R
Sbjct: 651 VQRFLKP---LSAAYHEVA---NSYSS--------------NNQSELQAVVTKHQETFTR 690
Query: 284 DKNMGLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIY 343
D NMGLV QV +S+YKKNI RLTKTFLTLSLSD+A+RV+LS P +AE +IL MIE+GEIY
Sbjct: 691 DNNMGLVKQVCSSVYKKNILRLTKTFLTLSLSDMANRVQLSSPKEAEEHILRMIEDGEIY 750
Query: 344 AMINQKDGMVVFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQIQVNPQYVKKSV 403
A INQ+DGMV F D+PEKY +P+ L ++Q+M +L + +Q+MD Q+ VNPQYV+K
Sbjct: 751 ASINQRDGMVCFHDNPEKYNNPKMLKKIDQEMRLFQQLDEKLQQMDRQLAVNPQYVQKER 810
Query: 404 G 404
G
Sbjct: 811 G 811
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 34.7 bits (76), Expect = 0.14
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 99 ATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCM 158
A D + L T +V+ P++ + K+ RK++L ++ +T ++ LC + C
Sbjct: 987 AIDSHRKLIAKSTQLIVQTSAPLQKPVLRKRLCRKLELLNNSVTGCESNPSFLC-IRLCR 1045
Query: 159 KPALEFLDTDVTGIGNEL 176
K LE L+T VT +G +L
Sbjct: 1046 K--LELLNTSVTVMGAKL 1061
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 6 EQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTV---LETLDIQQHSLGVLAVL 62
E FV + G D+++ ++K+ + +Q + +N + +E + S ++A L
Sbjct: 400 ESFVEEALARTEGGTLADMFDFLSKARKEIQEQAEKINQIAHDMEQTKTKLQSEEIVAEL 459
Query: 63 VAKFSLP 69
V F LP
Sbjct: 460 VTSFLLP 466
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 29.9 bits (64), Expect = 4.1
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 93 GEQVRFATDLYADLCHLLTNHLVEIKQPIRG--LEILKKAIRKIQLFDSQLTSIHADLCQ 150
GE V F+TDLY + + L+E++ +R + L+KA+ + +T + DL +
Sbjct: 475 GENVDFSTDLYP--TGNVEDWLLEVENTMRNSLRDTLRKALELYPTLNDLVTLVRGDLSK 532
Query: 151 LCLLSKCMKPALEFLDTDVTGIGNELG--GINDSKHFLLYYYY 191
L L +E DV G E G ND + YY
Sbjct: 533 LARLILGALIVIEVHACDVAGKMVEEGFQSANDFEWISQLRYY 575
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 261 SAPYHDLVASQHAASKHREIFVRDKNMGLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASR 320
+AP ++ S A + ++ DK L +++ K+ + TK LT SLSDV R
Sbjct: 7 TAPNPSIMTSSPAKANYKWWETDDKTKRLYTELIAEKLSKSSPKKTKPTLTRSLSDVNFR 66
Query: 321 VELS 324
S
Sbjct: 67 ARSS 70
>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
Length = 1072
Score = 29.1 bits (62), Expect = 7.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 1 MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLG 57
+A +E+F NN++T S F + Y++ + D L R F ++ I Q +G
Sbjct: 410 VADTIEKFANNIKT---STGFNETYDLTKELDNQLSRVGFTVSCYTAKNRITQRIIG 463
>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1328
Score = 29.1 bits (62), Expect = 7.1
Identities = 21/97 (21%), Positives = 37/97 (38%)
Query: 307 KTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGMVVFLDSPEKYASPE 366
+T L S V + V +S T + +Y N++D + D P SPE
Sbjct: 504 RTVLAFSTPTVRTGVLVSSRSGGATSTDETVPATMVYPDSNKQDTTIADYDKPPDICSPE 563
Query: 367 TLCVLEQQMAACTKLHQYIQEMDVQIQVNPQYVKKSV 403
C+ Q + H + + ++ VN + +V
Sbjct: 564 NGCIKVYQSFKALERHLDVGKNLIEPSVNINMTRSAV 600
>SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5)
Length = 426
Score = 28.7 bits (61), Expect = 9.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 161 ALEFLDTDVTG--IGNELGGINDSKHFLLYYYYGGMIYTAMKNYDRA 205
A F+ D TG + EL + ++H+ YYYY +I T+ + Y ++
Sbjct: 276 AAYFVLADPTGNSVVKELQTVEINEHYYYYYYYKLLIDTSAQKYPQS 322
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,654
Number of Sequences: 59808
Number of extensions: 534357
Number of successful extensions: 1353
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 10
length of query: 423
length of database: 16,821,457
effective HSP length: 84
effective length of query: 339
effective length of database: 11,797,585
effective search space: 3999381315
effective search space used: 3999381315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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