GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
         (423 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3441|AAF51652.1|  445|Drosophila melanogaster CG18332-P...   417   e-116
AY071575-1|AAL49197.1|  445|Drosophila melanogaster RE63441p pro...   416   e-116
AF129081-1|AAD28606.1|  445|Drosophila melanogaster COP9 signalo...   415   e-116

>AE014296-3441|AAF51652.1|  445|Drosophila melanogaster CG18332-PA
           protein.
          Length = 445

 Score =  417 bits (1026), Expect = e-116
 Identities = 226/443 (51%), Positives = 296/443 (66%), Gaps = 29/443 (6%)

Query: 1   MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 60
           M S LE +VN VRT+SASG++R+L E + +S  +L RN   L+ VLETLD+QQHSLGVL 
Sbjct: 1   MGSALENYVNQVRTLSASGSYRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLY 60

Query: 61  VLVAKF-SLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQ 119
           VL+AK  S    NPE  +  + Q   DF+   N EQ+R+A   + + CHL T  +V+   
Sbjct: 61  VLLAKLHSASTANPEPVQ--LIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKNL 118

Query: 120 PIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGN----- 174
            I G+ I+ +AI +I+  ++QLT IHADLC L L +K     L +LD D+T I       
Sbjct: 119 SILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAEC 178

Query: 175 ---------ELGGINDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIML 225
                         ND+K+FLLY+YYGGMIYTA+KNY+RALYFFEV +T PAM +SHIML
Sbjct: 179 KTQQQQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIML 238

Query: 226 EAYKKYILVSLILHGKVLPMPKYTSQVVCRFLKPLSAPYHDLVASQHAAS---------K 276
           EAYKK+++VSLI+ GK+  +PK T QV+ RF+KP++  YHDLV     +S         K
Sbjct: 239 EAYKKFLMVSLIVEGKIAYIPKNT-QVIGRFMKPMANHYHDLVNVYANSSSEELRIIILK 297

Query: 277 HREIFVRDKNMGLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNM 336
           + E F RD NMGL  QV  S+YK+NIQRLTKTFLTLSLSDVASRV+L+  ++AE YILNM
Sbjct: 298 YSEAFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVQLASAVEAERYILNM 357

Query: 337 IEEGEIYAMINQKDGMVVFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQIQVNP 396
           I+ GEIYA INQKDGMV+F D PEKY SPE    ++  +       + I +M+ +I +NP
Sbjct: 358 IKSGEIYASINQKDGMVLFKDDPEKYNSPEMFLNVQNNITHVLDQVRQINKMEEEIILNP 417

Query: 397 QYVKKSVGSHDEDMPGTSQNTKT 419
            YVKK++GS D+D+  TSQ+ KT
Sbjct: 418 MYVKKALGSQDDDL--TSQHPKT 438


>AY071575-1|AAL49197.1|  445|Drosophila melanogaster RE63441p
           protein.
          Length = 445

 Score =  416 bits (1024), Expect = e-116
 Identities = 226/443 (51%), Positives = 295/443 (66%), Gaps = 29/443 (6%)

Query: 1   MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 60
           M S LE +VN VRT+SASG++R+L E + +S  +L RN   L+ VLETLD+QQHSLGVL 
Sbjct: 1   MGSALENYVNQVRTLSASGSYRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLY 60

Query: 61  VLVAKF-SLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQ 119
           VL+AK  S    NPE  +  + Q   DF+   N EQ+R+A   + + CHL T  +V+   
Sbjct: 61  VLLAKLHSASTANPEPVQ--LIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKNL 118

Query: 120 PIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGN----- 174
            I G+ I+ +AI +I+  ++QLT IHADLC L L +K     L +LD D+T I       
Sbjct: 119 SILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAEC 178

Query: 175 ---------ELGGINDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIML 225
                         ND+K+FLLY+YYGGMIYTA+KNY+RALYFFEV +T PAM +SHIML
Sbjct: 179 KTQQQQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIML 238

Query: 226 EAYKKYILVSLILHGKVLPMPKYTSQVVCRFLKPLSAPYHDLVASQHAAS---------K 276
           EAYKK+++VSLI+ GK+  +PK T QV+ RF+KP++  YHDLV     +S         K
Sbjct: 239 EAYKKFLMVSLIVEGKIAYIPKNT-QVIGRFMKPMANHYHDLVNVYANSSSEELRIIILK 297

Query: 277 HREIFVRDKNMGLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNM 336
           + E F RD NMGL  QV  S+YK+NIQRLTKTFLTLSLSDVASRV L+  ++AE YILNM
Sbjct: 298 YSEAFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVHLASAVEAERYILNM 357

Query: 337 IEEGEIYAMINQKDGMVVFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQIQVNP 396
           I+ GEIYA INQKDGMV+F D PEKY SPE    ++  +       + I +M+ +I +NP
Sbjct: 358 IKSGEIYASINQKDGMVLFKDDPEKYNSPEMFLNVQNNITHVLDQVRQINKMEEEIILNP 417

Query: 397 QYVKKSVGSHDEDMPGTSQNTKT 419
            YVKK++GS D+D+  TSQ+ KT
Sbjct: 418 MYVKKALGSQDDDL--TSQHPKT 438


>AF129081-1|AAD28606.1|  445|Drosophila melanogaster COP9
           signalosome subunit 3 CSN3 protein.
          Length = 445

 Score =  415 bits (1022), Expect = e-116
 Identities = 226/443 (51%), Positives = 296/443 (66%), Gaps = 29/443 (6%)

Query: 1   MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 60
           M S LE +VN VRT+SASG++R+L E + +S  +L RN   L+ VLETLD+QQHSLGVL 
Sbjct: 1   MGSALENYVNQVRTLSASGSYRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLY 60

Query: 61  VLVAKF-SLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQ 119
           VL+AK  S    NPE  +  + Q   DF+   N EQ+R+A   +   CHL T  +V+   
Sbjct: 61  VLLAKLHSASTANPEPVQ--LIQLMRDFVQRNNNEQLRYAVCAFYKTCHLFTEFVVQKNL 118

Query: 120 PIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGN----- 174
            I G+ I+ +AI +I+  ++QLT IHADLC L L +K    AL +LD D+T I       
Sbjct: 119 SILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVALPYLDADITDISTVAAEC 178

Query: 175 ---------ELGGINDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIML 225
                         ND+K+FLLY+YYGGMIYTA+KNY+RALYFFEV +T PAM +SHIML
Sbjct: 179 KTQQQQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIML 238

Query: 226 EAYKKYILVSLILHGKVLPMPKYTSQVVCRFLKPLSAPYHDLVASQHAAS---------K 276
           EAYKK+++VSLI+ GK+  +PK T QV+ RF+KP++  YHDLV     +S         K
Sbjct: 239 EAYKKFLMVSLIVEGKIAYIPKNT-QVIGRFMKPMANYYHDLVNVYANSSSEELRIIILK 297

Query: 277 HREIFVRDKNMGLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNM 336
           + E F RD NMGL  QV  S+YK+NIQRLTKTFLTLSLSDVASRV+L+  ++AE YILNM
Sbjct: 298 YSEAFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVQLASAVEAERYILNM 357

Query: 337 IEEGEIYAMINQKDGMVVFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQIQVNP 396
           I+ GEIYA INQKDGMV+F D PEKY SPE    ++  +       + I +M+ +I +NP
Sbjct: 358 IKSGEIYASINQKDGMVLFKDDPEKYNSPEMFLNVQNNITHVLDQVRQINKMEEEIILNP 417

Query: 397 QYVKKSVGSHDEDMPGTSQNTKT 419
            YVKK++GS ++D+  TSQ+ KT
Sbjct: 418 MYVKKALGSQEDDL--TSQHPKT 438


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,138,011
Number of Sequences: 52641
Number of extensions: 833997
Number of successful extensions: 1883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1868
Number of HSP's gapped (non-prelim): 3
length of query: 423
length of database: 24,830,863
effective HSP length: 87
effective length of query: 336
effective length of database: 20,251,096
effective search space: 6804368256
effective search space used: 6804368256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)