GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
         (423 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    70   3e-12
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    32   0.88 
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    30   3.6  

>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 70.1 bits (164), Expect = 3e-12
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 22/188 (11%)

Query: 183 KHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILHGKV 242
           K+ L Y Y G  I   +K ++ AL+  E+ V +PA  V    L+++KKY+L+SLIL GKV
Sbjct: 257 KYVLDYLYNGACILIELKRFEDALFLLEICVGMPAFSVQDQHLDSFKKYVLISLILKGKV 316

Query: 243 ---------------LPMPKYTSQVVCRFLKPLSAPYHDLVASQHAASKHREIFVRDKNM 287
                             P+Y      RF +  S+  H  V S   ++K R    +D N 
Sbjct: 317 DVTENGDKSAIRHFKTKSPEYKQFSEIRFSR--SSNTHSAVESLVKSAKDR--LRKDGNT 372

Query: 288 GLVNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMIN 347
            +   ++  M KK I  LT+ F ++ +S++     L    Q    I  ++EE  I   I 
Sbjct: 373 EIAKYLVVEMKKKTIMSLTRMFTSIRISEIEELAFLKSRDQVTELIGQLVEEQRITVRI- 431

Query: 348 QKDGMVVF 355
             DG +VF
Sbjct: 432 --DGDMVF 437


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 31.9 bits (69), Expect = 0.88
 Identities = 16/74 (21%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 290 VNQVLNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMINQK 349
           V+++   + +K + +  + + T+ ++ +A  V +S   + +  +L +IE+  +   I+Q 
Sbjct: 431 VDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSA-ELQLSLLELIEQKHVSLKIDQN 489

Query: 350 DGMVVFLDSPEKYA 363
           +G+V  LD  ++ A
Sbjct: 490 EGIVRILDERDENA 503


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 137 FDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGNELG--GINDSKHFLL 187
           F+ Q+TS+ A + Q    +K + PAL   +  VTG  +ELG  G++D ++ ++
Sbjct: 19  FNFQMTSVRAQIHQQLYKTKTIAPALTITNA-VTGGFDELGEFGLDDVENLMI 70


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,463
Number of Sequences: 27539
Number of extensions: 420025
Number of successful extensions: 1057
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 4
length of query: 423
length of database: 12,573,161
effective HSP length: 83
effective length of query: 340
effective length of database: 10,287,424
effective search space: 3497724160
effective search space used: 3497724160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)