GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
         (423 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.074
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 0.074
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 120  PIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGNELGGI 179
            P+R LEIL+ +  ++  F     +++A L +L L S       +FL    + + +    +
Sbjct: 888  PLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCKFLQELSSWVSDNAHKV 947

Query: 180  NDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVT---VPAMVVSHIMLEAYKKYILVSL 236
             D+    ++ YYGG    A   Y R L   E V +       V+  IM+  Y   +  +L
Sbjct: 948  VDASD--VWCYYGG---DARPAYRRRLNVNETVCSDYFSQGGVIESIMVSDYLPLVAATL 1002


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 75  VDRSTMYQQFHDFINNCNGEQVRFATDL 102
           + RS   +QF D +  CN   VR   D+
Sbjct: 88  ITRSGTREQFIDMVARCNKAGVRIYVDV 115


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,141
Number of Sequences: 429
Number of extensions: 5009
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 423
length of database: 140,377
effective HSP length: 60
effective length of query: 363
effective length of database: 114,637
effective search space: 41613231
effective search space used: 41613231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)