Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001209-TA|BGIBMGA001209-PA|IPR000717|Proteasome
component region PCI
(423 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CS... 240 1e-63
At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3, p... 59 5e-09
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p... 56 3e-08
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi... 31 1.9
At3g11540.2 68416.m01408 gibberellin signal transduction protein... 29 4.4
At3g11540.1 68416.m01407 gibberellin signal transduction protein... 29 4.4
At1g80040.1 68414.m09369 expressed protein 29 7.7
>At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CSN
complex subunit 3 (CSN3) / FUSCA protein (FUS11) CSN3,
FUS11; identical to COP9 signalosome subunit 3
GI:14388969 [Arabidopsis thaliana]; identical to cDNA
CSN complex subunit 3 (CSN3) GI:18056656; contains Pfam
profile PF01399: PCI domain
Length = 429
Score = 240 bits (588), Expect = 1e-63
Identities = 142/408 (34%), Positives = 224/408 (54%), Gaps = 20/408 (4%)
Query: 5 LEQFVNNVRTMSASG-NFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLV 63
+E + +++ +S S + L++++ + + L+ + L+ LD +HSLG L L
Sbjct: 8 VEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLYFLE 67
Query: 64 AKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRG 123
P + FIN+C+ Q+R A+ + LC +L +H++ + P+RG
Sbjct: 68 VLTCGPVSKEKAAYEIPI--IARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLRG 125
Query: 124 LEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGNELGGINDSK 183
+ L A++K+Q+ +LT++H D+ QLCL +K K L D+ I + +
Sbjct: 126 VGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEI-------DQPR 178
Query: 184 HFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILHGKVL 243
F LY YYGGMI +K + +AL VVT P V+ I LEAYKKYILVSLI +G+
Sbjct: 179 DFFLYSYYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFT 238
Query: 244 -PMPKYTSQVVCRFLKPLSAPYHDL--------VASQHAASKHREI-FVRDKNMGLVNQV 293
+PK S R K + PY +L + A R F DKN+GLV Q
Sbjct: 239 NTLPKCASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQA 298
Query: 294 LNSMYKKNIQRLTKTFLTLSLSDVASRVELSGPLQAETYILNMIEEGEIYAMINQKDGMV 353
++S+YK+NI RLT+ +LTLSL D+A+ V+L +AE ++L MI++G+I+A+INQKDGMV
Sbjct: 299 VSSLYKRNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMIQDGQIHALINQKDGMV 358
Query: 354 VFLDSPEKYASPETLCVLEQQMAACTKLHQYIQEMDVQIQVNPQYVKK 401
FL+ PE+Y S E + +++ + L + + MD + +P Y+ K
Sbjct: 359 RFLEDPEQYKSSEMIEIMDSVIQRTIGLSKNLLAMDESLSCDPLYLGK 406
>At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3,
putative (RPN3) similar to SP:Q06364 from [Daucus
carota]
Length = 488
Score = 59.3 bits (137), Expect = 5e-09
Identities = 46/211 (21%), Positives = 98/211 (46%), Gaps = 9/211 (4%)
Query: 180 NDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILH 239
+ ++ F Y +Y G I T Y A + ++ K ILV L+L
Sbjct: 234 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLL- 292
Query: 240 GKVLPMPKYTSQVVCRFLKPL-----SAPYHDLVASQHAASKHREIFVRDKNMGLVNQVL 294
G++ +T + + + L+P + DL + K + F +D+ L+ ++
Sbjct: 293 GEIPERSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRLR 352
Query: 295 NSMYKKNIQRLTKTFLTLSLSDVASRVELSG--PL-QAETYILNMIEEGEIYAMINQKDG 351
+++ + ++ ++ ++ +SL DVA ++ L+ P+ AE+ + I +G I A I+ K+G
Sbjct: 353 HNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNG 412
Query: 352 MVVFLDSPEKYASPETLCVLEQQMAACTKLH 382
+V ++ + Y++ E ++A C +H
Sbjct: 413 CMVSKETGDIYSTNEPQTAFNSRIAFCLNMH 443
>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
putative (RPN3) similar to 26S proteasome regulatory
subunit S3 SP:P93768 [Nicotiana tabacum (Common
tobacco)]
Length = 487
Score = 56.4 bits (130), Expect = 3e-08
Identities = 45/211 (21%), Positives = 96/211 (45%), Gaps = 9/211 (4%)
Query: 180 NDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHIMLEAYKKYILVSLILH 239
+ ++ F Y +Y G I T Y A + ++ K I+V L+L
Sbjct: 233 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLL- 291
Query: 240 GKVLPMPKYTSQVVCRFLKPL-----SAPYHDLVASQHAASKHREIFVRDKNMGLVNQVL 294
G++ +T + + + L+P + DL K + F D+ L+ ++
Sbjct: 292 GEIPERSIFTQKGMEKTLRPYFELTNAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRLR 351
Query: 295 NSMYKKNIQRLTKTFLTLSLSDVASRVELSG--PL-QAETYILNMIEEGEIYAMINQKDG 351
+++ + ++ ++ ++ +SL DVA ++ L+ P+ AE+ + I +G I A I+ K+G
Sbjct: 352 HNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNG 411
Query: 352 MVVFLDSPEKYASPETLCVLEQQMAACTKLH 382
+V ++ + Y++ E ++A C +H
Sbjct: 412 CMVSKETGDIYSTNEPQTAFNSRIAFCLNMH 442
>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 900
Score = 30.7 bits (66), Expect = 1.9
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 164 FLDTDVTGIGNELGGINDSKHFLLYYYYGGMIYTAMKNYDRALYFFEVVVTVPAMVVSHI 223
FL DVTG+ + I S L+YY G++Y ++K +D A FE + + +
Sbjct: 118 FLAKDVTGVPSPT--IKSS----LFYYKTGLVYHSLKKFDLASDCFERATEIVSKIDIAK 171
Query: 224 MLEAYKKYILVSLIL 238
+ +A +K + + L L
Sbjct: 172 ISDAGEKKLFLDLNL 186
>At3g11540.2 68416.m01408 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 732
Score = 29.5 bits (63), Expect = 4.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 155 SKCMKPALEFLDTDVTGIGNELGGIND-------SKHFLLYYYYGGMIYTAMKNYDRALY 207
++C+ L L T + GN GI H+ YY G++Y+ M YD AL
Sbjct: 148 AECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALS 207
Query: 208 FFE 210
+E
Sbjct: 208 CYE 210
>At3g11540.1 68416.m01407 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 914
Score = 29.5 bits (63), Expect = 4.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 155 SKCMKPALEFLDTDVTGIGNELGGIND-------SKHFLLYYYYGGMIYTAMKNYDRALY 207
++C+ L L T + GN GI H+ YY G++Y+ M YD AL
Sbjct: 148 AECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALS 207
Query: 208 FFE 210
+E
Sbjct: 208 CYE 210
>At1g80040.1 68414.m09369 expressed protein
Length = 248
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 26 EIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLVAKFSLPPGNPEVDRSTMYQQFH 85
E + K + VL+R + + L+ H LG+L LV ++ N EV+ + Q
Sbjct: 172 ETLVKDNTVLKRAVAIQHERQKALEDANHQLGLLKQLVPQYQEKLRNLEVNNYALRMQLQ 231
Query: 86 DFINNCNGEQVRFATDLY 103
+ + N RF D++
Sbjct: 232 Q-VEHGNSMPARFNPDVF 248
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,024
Number of Sequences: 28952
Number of extensions: 382285
Number of successful extensions: 887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 7
length of query: 423
length of database: 12,070,560
effective HSP length: 83
effective length of query: 340
effective length of database: 9,667,544
effective search space: 3286964960
effective search space used: 3286964960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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