Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001208-TA|BGIBMGA001208-PA|IPR011046|WD40-like
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 34 0.066
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 33 0.15
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 33 0.20
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 30 1.4
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 29 2.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 3.3
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 28 4.3
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 28 4.3
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 28 5.7
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 5.7
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 28 5.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 7.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 7.6
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 7.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 7.6
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 27 10.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 27 10.0
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 34.3 bits (75), Expect = 0.066
Identities = 81/437 (18%), Positives = 173/437 (39%), Gaps = 27/437 (6%)
Query: 26 LDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGIIYTVS 85
++L+A+ + R + Q++W + + W DG + +G+ G + +
Sbjct: 39 MELIAILTCSNHLICCRSNSQRIWDVDFHDLEAT--ELCWNHDGNLIVVGFKNGELKIID 96
Query: 86 VEDKGIIDKYXXXXXXXXXXXXAKYSGISCIVWAIRTDILQSATEYN-LYDD--ASIFLQ 142
++++ ++ IV R D L AT Y L +S +
Sbjct: 97 SSTGHLVEQRPASRDLAVLMIT--WAMQETIVNEKRNDFLFDATAYMPLLGTLPSSAKEE 154
Query: 143 KVPMSSGYKNSHEDNKDCKYIQNPTQLNMLIVGYGTGNIYLNMYGRYPYGTIQLAEVAKD 202
++ S E K + +N ++ +L + G Y+NM+ Y G ++ K
Sbjct: 155 RIFSSKAIAQFFEPRK--REGENNKKVELLSILDERGIRYINMFSSYKIGE---SDSLKS 209
Query: 203 DFGEYKVLDVNMSDDFSVMQVLYVDRLTNNVFLAIVNTGVLSAYADEINTVAHKHGQIVQ 262
+ ++++D + VL TN + L + +L I +A ++
Sbjct: 210 ALNLGVPISHSITNDLAY-HVLICKGGTN-ISLKTLYMPLLKNDLGSIVDIATMSTRMQH 267
Query: 263 LMTQLDQTMISITEAWEHI-------LLEMDTKMAYYASSVHEGGVSADLLELLMLGTPS 315
L+ L++ + ++ E ++++ + D ++ Y+ + + +L + +M G PS
Sbjct: 268 LVRYLEEVLNAMYEEFDNVFKSEASFIKTFDALVSKYSDTTFFS-LQLELYQFIMNGIPS 326
Query: 316 VDLQVYLLEKLTTNDLKKFGNSVELSYSTIQKLVLKQLNIVGQSLVYYLAELRGLTRIED 375
L+ ++ E++ LK + ++ SY+++ + + + L L+ RG + I
Sbjct: 327 DLLKEWINERVGDRVLKNWERAMVNSYTSLIIFCQEFVIPACERLTVLLSSARGKS-IWG 385
Query: 376 RYKILGLEESSVTEAIKACCAFL-NKCLELQQVIDVSMRNYKAFFRWLFVVIVRQLDEQT 434
K L ++ + E A +L N + + K F WL IV + +
Sbjct: 386 HMKGNTLLDAKLVEDCLATLGYLQNNVFSFLNCLFEEKKYMKHFISWLNYAIV-EFNTSE 444
Query: 435 PSEIVKINQQELSHIAE 451
PS I Q+ + HI E
Sbjct: 445 PSSIPP--QEIIEHINE 459
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 33.1 bits (72), Expect = 0.15
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 369 GLTRIEDRYKILGLEESSVTEAIKACCAFLNKCLELQQVIDVSMRNYKAFFRWLFVVIVR 428
GLT +E ++ ++ IK C K L + + ++ F ++L V + +
Sbjct: 132 GLTNLEKSTHVVLIKCIEQLIQIKVCMKN-EKMKNLMEQLKPLLQTECQFDKFLIVELFQ 190
Query: 429 QLDEQTPSEIVKINQQELSHIAEFLYNFDNVKVDSSDKPPDKLI 472
E + E++ I+ +S +A F Y K +S PP L+
Sbjct: 191 YCFESSQDEVMNISLDTISKLASFAYFSSKDKTPASFGPPKSLL 234
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 15 YQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAI 74
Y ++L+ WSN L+++A++ + V + V +L E+ V ++ W DG L++
Sbjct: 181 YYLNLLDWSN-LNVVAVALERN-VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSV 238
Query: 75 GYNLGIIYTVSVEDK 89
G G++ VE +
Sbjct: 239 GLGNGLVDIYDVESQ 253
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 242 VLSAYADEINTVAHKHGQIVQLMTQLDQTMISITEAWEHILLEMDTKMAYYASSVHEGGV 301
+L Y ++ +A K ++ + T +T++++ + I +++ ++ S++ +
Sbjct: 11 LLRKYQQDVYNIASKQNTLLVMRTGAGKTLLAV----KLIKQKLEEQILIQESNLEHKKI 66
Query: 302 SADLLELLMLGTPSVDLQVYLLEKLTTNDLKKFGN-SVELSYSTIQKLVLKQLNIVGQSL 360
S L+ + L + Y+ +L +G S+E+S + ++LK IV +
Sbjct: 67 SVFLVNKVPLVFQQAE---YIRSQLPAKVGMFYGELSIEMSEQLLTNIILKYNVIVITAD 123
Query: 361 VYYLAELRGLTRIED 375
++YL RG I D
Sbjct: 124 LFYLFLARGFLSIND 138
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 55 KENGCVQAMAWRPDGKALAIG-YNLGIIYTVSVEDKGIIDKY 95
KENGC+ +A PDG+ + ++LGI+ SV + +++
Sbjct: 117 KENGCIIFIAALPDGQIIVSSKHSLGIVEGQSVSHANVGERW 158
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 617 VMKCYFSSYLVQNGTDDQQ----NEPTNLLDLQFYSPEY------LSVITTHPENEENTI 666
VM CYF++YL DD+ N P+ +L+ ++ + +N + +
Sbjct: 155 VMSCYFTAYLAMESVDDRSTIDLNSPSKGKELELTCQKFADFERSFTFFCREYQNSDTIL 214
Query: 667 ----FIQVPVKHLLENSTELNIN-TKSCIFTDRSVKKDIAPLL 704
I +KH EN+ +L++ S + +D K ++ L+
Sbjct: 215 QHHPLILSTIKHAEENNLDLSVRLLPSKVLSDSEFYKSLSNLV 257
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 4.3
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 188 RYPYGTIQLAEVAKDDFGEYKVLDVN--MSDDFSVMQVLYVDRLTNNVFLAIVNTGVLSA 245
RYP+GT ++ E DF + K L +N M + + + +R L +G+
Sbjct: 247 RYPWGTSEIYEETHCDFLKLKKLLINRHMLELINTTETNIYERYRREQ-LTNRKSGIPKL 305
Query: 246 YADEINTVAHKHGQIVQLMTQLDQTMISITEAWEHILLEMDTKMAYYASSVHE 298
+ + ++ I Q +TQ+ S +A E ++E + S HE
Sbjct: 306 KKEHYERLNNEKRAIQQKITQMTNETESFFQAKEEKMIETRDALNSELSEYHE 358
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 304 DLLELLMLGTPSVDLQVYLLEKLTTNDLKKFGNSVELSYSTIQKLVLKQLNIVGQSLV 361
+LLELL + + + +LEK ND F +S+ + +L +K+L V LV
Sbjct: 60 ELLELLQVDVEILANRCVVLEKRAFNDSMSFKSSLYHVMAAAPQLQIKELRFVHDFLV 117
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 460 KVDSSDKPPDKLITFNLERLGQYLQNQELTILPEDEDNTWHKFLQDNACFLK 511
K++S P + + + LE+L + + IL +++ W K+ ++ + F K
Sbjct: 850 KLNSYVVPMETFVKYALEKLRPLISPDSVCILSKEDKKHWLKYKKNRSTFAK 901
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 340 LSYSTIQKLVLKQLNIVGQSLVYYLAEL 367
L YS Q++ LKQ++ + QSLV Y + L
Sbjct: 523 LVYSRFQRIPLKQISCLKQSLVAYYSVL 550
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 636 NEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNI 684
N P +L+ L+ Y IT PE+++N FI K +ENS L I
Sbjct: 444 NSPDDLISLEDY-------ITKMPEHQKNIYFITGESKQAVENSPFLEI 485
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 5.7
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 377 YKILGLEESSVTEAIKACCAFLNKCLELQQVIDVSMR--NYKAFFRWL-----FVVIVRQ 429
YK LE S+ I+ A +N L+ VID S R + AFF L V+
Sbjct: 258 YKFTPLENGSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTL 317
Query: 430 LDEQTPSEIVKINQQELSH 448
+ T E++ I EL H
Sbjct: 318 VKNHTEPELIAILGHELGH 336
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 430 LDEQTPSEIVKINQQELSHIAEFLYNF----DNVKVDSSDKPPDKLITFNLERLGQYLQN 485
++ PS ++ IN Q ++ + +LY + + SS+KPP ++ ++ +
Sbjct: 334 IESHVPSCVLNINSQVIAFLL-YLYGYFLPAPSTPGFSSNKPPLTMLQLDIHISSVQILT 392
Query: 486 QELTILPEDEDNTWHKFLQDNACFLKDNDTFFSMK 520
LPE +D + H + + + N F MK
Sbjct: 393 H--CKLPESQDFSMHNDVDELLHTIPSNGAVFEMK 425
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 697 KKDIAPLLEQNVYKVLEKMDGSRLAVSGGRK-VAVILSKSSRKVRVF 742
++D+AP+LE+ L+ M+G A RK V I+ + +++R F
Sbjct: 982 RRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSF 1028
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 15 YQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAI 74
Y+V + +S+ LA++ G V+I + +G + MAW P L +
Sbjct: 202 YEVSSLAYSSDGGFLAIARVNGFVEIWNRKTKNNRCDYKFHHDGDISCMAWSPINWTLLV 261
Query: 75 GYNLGIIY 82
G + G IY
Sbjct: 262 GGSTGNIY 269
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 486 QELTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQAHLIETVTKVFDVV 545
Q T P D D + F +D+ +K DTF M+ F+ + Q+ +E + FD
Sbjct: 124 QNRTAKPNDNDGDDYSFFEDDLPVIK--DTF--MRGFQSFK--QRSMEWVENIASKFDGE 177
Query: 546 HKD 548
+D
Sbjct: 178 EED 180
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 340 LSYSTIQKLVLKQLNIVGQSLVYYLAELRGLTRIEDRYKILGL 382
L Y T Q+L + + +G +++ LAEL GLT D ++ G+
Sbjct: 396 LKYITTQELTEEGIQRLGPTVIR-LAELEGLTAHADAVRVRGV 437
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 455 NFDNVKVDSSDKPPDKLITFNLERLGQYLQNQEL 488
N+D + S P + + + RL +YLQN EL
Sbjct: 133 NYDEASIPSFFSPHTERLVGRVLRLNRYLQNSEL 166
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,627,386
Number of Sequences: 5004
Number of extensions: 160708
Number of successful extensions: 445
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 24
length of query: 782
length of database: 2,362,478
effective HSP length: 78
effective length of query: 704
effective length of database: 1,972,166
effective search space: 1388404864
effective search space used: 1388404864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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