Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001208-TA|BGIBMGA001208-PA|IPR011046|WD40-like
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 60 5e-09
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 33 0.87
12_02_0850 + 23651496-23651801,23651893-23651986,23652280-236523... 31 2.7
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 31 2.7
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 31 3.5
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 31 3.5
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 31 3.5
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205... 30 6.2
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 30 6.2
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 30 6.2
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 30 8.1
03_02_0570 + 9545648-9545689,9546127-9546232,9546350-9546438 30 8.1
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 60.5 bits (140), Expect = 5e-09
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 22 WSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGII 81
W+ DLLA+ + +V +HR +WQ++W++ P K C+ ++ W PDGK +A+G G++
Sbjct: 4 WNPEKDLLAMVTDDSKVVLHRFNWQRLWTISPGK---CITSICWSPDGKIVALGTEDGLV 60
Query: 82 YTVSVE 87
VE
Sbjct: 61 LLHDVE 66
Score = 47.2 bits (107), Expect = 5e-05
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 238 VNTGVLSAYADEINTVAHKHGQIVQLMTQLDQTMISITEAWEHILLEMDTKMAYYASSVH 297
++T + +E++ ++ + I L+ + ++ + + W + + K + S +
Sbjct: 212 LDTSIFFNRKNELHQISQQASSIQDLVEVVRSSLSMMAKQWSSAMNLFNEKFSALPSLIA 271
Query: 298 EGGV---SADLLELLMLGT-PSVDLQVYLLEKLTTNDLKKFGNSVELSYSTIQKLVLKQL 353
G+ S D L+ GT S L +L+ L LK+ +V+ + ++ +V + L
Sbjct: 272 AHGMESSSEDEFMSLLFGTRTSPALHQFLVSSLGEAALKRIAKAVDSAGRELRVVVSEHL 331
Query: 354 NIVGQSLVYYLAELRGLTRIEDRYKILGLEES---SVTEAI 391
+ + + LAELRGL R R++ +GL+E VTE I
Sbjct: 332 QPAVEIISFRLAELRGLARWRSRFQNVGLDEKLIYGVTEKI 372
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 33.1 bits (72), Expect = 0.87
Identities = 32/168 (19%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 319 QVYLLEKLTTNDLKKFGNSVELSYSTIQKLVLK-QLNIVGQSLVYYLAELRGLTR----I 373
Q+ LEK + N ++ + +++ ++ Q+ I+G+ + E + + +
Sbjct: 211 QIRELEKTRPKVISTSANRAQIQDTVVERDAIQDQVKIIGEGIDGVKKERQAVRSKIKVL 270
Query: 374 EDRYKILGLEESSVTEAIKACCAFLNKCLELQQVIDVSMRNYKAFFRWLFVVIVRQLDEQ 433
ED K + +E S+ E + A A +K E + + Y A F ++ + D
Sbjct: 271 EDELKAIDMEMGSLQEDLTAANARKDKAHESLVQLRHARDAYNASFHQNRQLLSKARDLA 330
Query: 434 TPSEIVKINQQELSHIAEFLYNFDNVKVDSSDKPPDKLITFNLERLGQ 481
+ SE+ ++ + + + +F+ + N K D L + N +L +
Sbjct: 331 SRSELAQVQELYKTQVDKFVAEWCNSKAFREDYEKRILSSLNSRQLSR 378
>12_02_0850 +
23651496-23651801,23651893-23651986,23652280-23652398,
23652456-23652578,23652919-23652978,23653473-23653523
Length = 250
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 657 THPENEENTIFIQVPVKHLLENSTELNINTKSCIFTDRSVKKDIAPLLEQNVYK----VL 712
+HP + T F+Q + HLL N++ LN++ K+ + D+ P+ +V +L
Sbjct: 166 SHPHDFRKTCFLQAVLVHLL-NTSNLNLSRKAYVHDDQQ-STSSKPITMSSVPPLGDLIL 223
Query: 713 EKMDGSRLAV 722
EK+D ++V
Sbjct: 224 EKLDEVEISV 233
>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 15 YQVDLMVWSNRLDLLALSNNKGEVQI-HRLHWQKVWSLPPPKENGCVQAMAWRPDG 69
Y V + + + AL G V + L ++ W PPP ENG A++ P+G
Sbjct: 1053 YPVVVAAHPSEANQFALGLTDGGVYVLEPLESERKWGNPPPAENGSTSALSTPPNG 1108
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 31.1 bits (67), Expect = 3.5
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 181 IYLNMYGRYPYGTIQLAEVAKDDFGEYKVLDVN---MSDD---FSVMQVLYVDRLTNNVF 234
+YLN+ G++ + V FG KVLD++ +S D F+ + L V RL NN F
Sbjct: 270 LYLNLSNNKLTGSL-IDGVELSTFGRLKVLDLSHNQLSGDLPGFNYVYDLEVLRLANNAF 328
Query: 235 LAIVNTGVL---SAYADEINTVAHKHGQIVQLMTQLDQTMISIT 275
V +G+L S E++ A+ + ++T +I+++
Sbjct: 329 TGFVPSGLLKGDSLVLSELDLSANNLTGHINMITSTTLQVINLS 372
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 31.1 bits (67), Expect = 3.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 55 KENGCVQAMAWRPDGKALAIGYN 77
++NG V +++W PDG+ +A+G N
Sbjct: 3094 EDNGPVTSVSWAPDGRHIAVGLN 3116
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 31.1 bits (67), Expect = 3.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 341 SYSTIQKLVLKQLNIVGQSLVYYLAELRGLTRIEDRYKILGLEESSVTEAIK 392
++ST L + L IV LVYY+ + ++ + Y ILGLE + IK
Sbjct: 65 NFSTCSNLTILLLWIVMIFLVYYIKHVSREVQVFEPYSILGLEPGASESDIK 116
>11_08_0004 +
27518384-27519018,27519147-27519397,27520437-27520559,
27523499-27524529
Length = 679
Score = 30.3 bits (65), Expect = 6.2
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 135 DDASIFLQKVPMSSGYKNSHEDNKDCKYIQNPTQLNMLI-VGYGTGNIYLNM------YG 187
D + L+ +P S Y+ H D + ++ PT+L++ + ++ N+ +G
Sbjct: 462 DVPMLVLELIPKGSLYEKLHGDGRHT-HLPLPTRLDIAVGCAEALACMHSNIGHKSVVHG 520
Query: 188 RYPYGTIQLA---EVAKDDFGEYKVLDVNMSDDFSVM-QVLYVD 227
G I L E DFG K++ V SD++SVM + Y+D
Sbjct: 521 DVKSGNILLGNNLEPKVSDFGSSKLMSVAKSDNWSVMADMSYID 564
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 30.3 bits (65), Expect = 6.2
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 426 IVRQLDEQTPSEIVKINQQELSHIAEFLYNFDNVKVDSSDKPP-DKLITFNLERLGQYLQ 484
+VR L QT E V+IN E + + E+L + DS K + R G ++
Sbjct: 942 LVRFLAAQTGHEFVRINNHEHTDLQEYLGTY---VTDSHGKLQFQEGALVKAVREGHWIV 998
Query: 485 NQELTILPEDEDNTWHKFLQDN 506
EL + P D ++ L DN
Sbjct: 999 LDELNLAPSDVLEALNRLLDDN 1020
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 30.3 bits (65), Expect = 6.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 553 FSVLCNIRCHEDQLNKNL-HNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFL 604
FS LC+ + + HN++ + QV DD+NKR S + KEG++ +
Sbjct: 851 FSALCDHASSQRTEEMIIGHNAVSIQQVMDDSNKRKPSPY---KGKKEGVFVM 900
>03_05_0937 - 28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 29.9 bits (64), Expect = 8.1
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 236 AIVNTGVLSAYADEINTVAHKHGQIVQLMTQLDQ-TMISITEAWEHILLEMDTKMAYYAS 294
A+ NTG+ E+N H Q+ ++++ LDQ ++++ + + ++E + + A+
Sbjct: 922 ALKNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCLDLEMVEFVLQDVFVAA 981
Query: 295 SVHEG-GVSADLLELLMLGT---PSVDLQVYLLEKLTTN-DLKKFGNSVELSYSTIQKLV 349
+G VS +L E M T V LQ L + L + G SVE+S S + +
Sbjct: 982 G--KGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSI 1039
Query: 350 LKQLNIVGQSL 360
+ L+++ L
Sbjct: 1040 GENLHLIDLEL 1050
>03_02_0570 + 9545648-9545689,9546127-9546232,9546350-9546438
Length = 78
Score = 29.9 bits (64), Expect = 8.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 672 VKHLLENSTELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEK 714
V+HL+E ++ + C+ T S + D+ P++ V+K LEK
Sbjct: 15 VQHLIEKCMTFGMSMEECMET-LSKRADVQPVVTSTVWKELEK 56
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,222,449
Number of Sequences: 37544
Number of extensions: 862069
Number of successful extensions: 1924
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 19
length of query: 782
length of database: 14,793,348
effective HSP length: 88
effective length of query: 694
effective length of database: 11,489,476
effective search space: 7973696344
effective search space used: 7973696344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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