Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001208-TA|BGIBMGA001208-PA|IPR011046|WD40-like
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59) 299 7e-81
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59) 299 7e-81
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11) 36 0.12
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 33 0.88
SB_39076| Best HMM Match : ATP-synt_ab_C (HMM E-Value=1) 32 2.0
SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 31 4.7
SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19) 30 8.2
>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 299 bits (733), Expect = 7e-81
Identities = 215/743 (28%), Positives = 382/743 (51%), Gaps = 55/743 (7%)
Query: 20 MVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLG 79
M WS ++DLLA+ +G+V ++RL WQ+VW++ E +AWRPDG L +GY G
Sbjct: 23 MKWSPKMDLLAVITAEGDVWLNRLSWQQVWAVSAGNEKAV--CLAWRPDGNLLCVGYESG 80
Query: 80 IIYTVSVEDKGIIDKYXXXXXXXXXXXXAKYSGISCIVWA--IRTDILQSATEY----NL 133
I + +E+ + K +C+ W +++ + + Y L
Sbjct: 81 EIKSFDIENAECVHKCSIGNTP------------TCMEWTEEVKSSAPRKPSFYIEQSQL 128
Query: 134 YDDASIFLQKVPMSSGYKNSHED-NKDCKYIQN-PTQLNMLIVGYGTGNIYLNMYGRYPY 191
Y + FL K + K SH++ NKD K + + P +L++L VG +G++++ +YG +
Sbjct: 129 YLPSLPFLPKSGGAVFSKESHDEGNKDRKKLSSLPDKLSILTVGDVSGHVHIMLYGMFLA 188
Query: 192 GTIQLAEVAKDDFGEYKVLDVNMSDDFSVMQVLY-VDRLTNNVF-LAIVNTGVLSAYADE 249
G + + + G ++++ S D ++ V+ ++T + L T +LS++ E
Sbjct: 189 GVLPIENDIESTHG-VEIVNAAFSADLELLNVIVKAKQITGATYSLLAYTTTLLSSHRHE 247
Query: 250 INTVAHKHGQIVQLMTQLDQTMISITEAWEHILLEMDTKMAYYASS--VHEGGVSADLLE 307
++ +A K G + L+ ++T+ S++EAWE ILLEM+TK+ Y + + + ++ + L
Sbjct: 248 LSLIAKKSGIVTSLLEYFNETIRSMSEAWEDILLEMETKLTAYMNEQKMPKFSITNEFLT 307
Query: 308 LLMLGTPSVDLQVYLLEKLTTNDLKKFGNSVELSYSTIQKLVLKQLNIVGQSLVYYLAEL 367
LL G S +LQ +LL LT LKK G +++ SY++IQ L LK L V ++L+Y++ ++
Sbjct: 308 LLTKGILSPELQNFLLHDLTEKGLKKLGVNIDNSYTSIQSLALKHLQCVTEALLYHMTDI 367
Query: 368 RGLTRIEDRYKILGLEESSVTEAIKACCAFLNKCLELQQVIDVSMRNYKAFFRWLFVVIV 427
RG+ R + + +LGL E S AIK+ A + K EL +VI+ S++++KAFF+WL+ +I+
Sbjct: 368 RGMARWYNLFGVLGLSEKSTDVAIKSLGAVMLKNTELVEVIETSLKSFKAFFQWLYSIIL 427
Query: 428 RQLDEQTPSEIVKINQQELSHIAEFLYNFDNVKVDSSDKPPDKLITFNLERLGQYLQNQE 487
R DE PS + K +QQ++ +A FL + D K F +ER+GQY +++
Sbjct: 428 RLSDEPVPSYVKKFSQQDILLLANFLKT--QLNTDEHGK-------FRIERVGQYFEDKP 478
Query: 488 LTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQAHLIETVTKVFDVVHK 547
LT+L DN + KF+ + + LKD+ + + ++SL+ L+ V F V +
Sbjct: 479 LTVLSSFGDNAFAKFV-EGSTVLKDSP--YMVSHSMEHSLLSLAKALVGNVNHTFKHVSE 535
Query: 548 DTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVN 607
G+ F+ + E Q+N ++Q T AF E ++ + +
Sbjct: 536 VIGESFTCKGLVTLGEAQMN----TPSVITQASMGTPPAQYIAFSIGEKLSEKLHLIKIE 591
Query: 608 IKE-RSCNIAVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEEN-- 664
+ SC V S L QN +Q+ D FY+P+ L+ + +++ +
Sbjct: 592 AETGNSCATTVN----ISKLGQNSEIEQEKSIFKFQDAMFYTPDSLTALMRDEKSDSDAE 647
Query: 665 TIFIQVPVKHLLENS--TELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEKMDGSRLAV 722
T+ +Q+P+ +L++NS + + T+ D+ L Q ++ L M +AV
Sbjct: 648 TVLVQIPL-NLIDNSYFRKFTLGDVRSNVTESLQMCDVGAWLTQ--FRRLAGMLSGSIAV 704
Query: 723 SGGRKVAVILSKSSRKVRVFEME 745
SG RKV +LS S R+V + +M+
Sbjct: 705 SGARKVTCVLSASRRRVIMLDMD 727
>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 299 bits (733), Expect = 7e-81
Identities = 215/743 (28%), Positives = 382/743 (51%), Gaps = 55/743 (7%)
Query: 20 MVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLG 79
M WS ++DLLA+ +G+V ++RL WQ+VW++ E +AWRPDG L +GY G
Sbjct: 23 MKWSPKMDLLAVITAEGDVWLNRLSWQQVWAVSAGNEKAV--CLAWRPDGNLLCVGYESG 80
Query: 80 IIYTVSVEDKGIIDKYXXXXXXXXXXXXAKYSGISCIVWA--IRTDILQSATEY----NL 133
I + +E+ + K +C+ W +++ + + Y L
Sbjct: 81 EIKSFDIENAECVHKCSIGNTP------------TCMEWTEEVKSSAPRKPSFYIEQSQL 128
Query: 134 YDDASIFLQKVPMSSGYKNSHED-NKDCKYIQN-PTQLNMLIVGYGTGNIYLNMYGRYPY 191
Y + FL K + K SH++ NKD K + + P +L++L VG +G++++ +YG +
Sbjct: 129 YLPSLPFLPKSGGAVFSKESHDEGNKDRKKLSSLPDKLSILTVGDVSGHVHIMLYGMFLA 188
Query: 192 GTIQLAEVAKDDFGEYKVLDVNMSDDFSVMQVLY-VDRLTNNVF-LAIVNTGVLSAYADE 249
G + + + G ++++ S D ++ V+ ++T + L T +LS++ E
Sbjct: 189 GVLPIENDIESTHG-VEIVNAAFSADLELLNVIVKAKQITGATYSLLAYTTTLLSSHRHE 247
Query: 250 INTVAHKHGQIVQLMTQLDQTMISITEAWEHILLEMDTKMAYYASS--VHEGGVSADLLE 307
++ +A K G + L+ ++T+ S++EAWE ILLEM+TK+ Y + + + ++ + L
Sbjct: 248 LSLIAKKSGIVTSLLEYFNETIRSMSEAWEDILLEMETKLTAYMNEQKMPKFSITNEFLT 307
Query: 308 LLMLGTPSVDLQVYLLEKLTTNDLKKFGNSVELSYSTIQKLVLKQLNIVGQSLVYYLAEL 367
LL G S +LQ +LL LT LKK G +++ SY++IQ L LK L V ++L+Y++ ++
Sbjct: 308 LLTKGILSPELQNFLLHDLTEKGLKKLGVNIDNSYTSIQSLALKHLQCVTEALLYHMTDI 367
Query: 368 RGLTRIEDRYKILGLEESSVTEAIKACCAFLNKCLELQQVIDVSMRNYKAFFRWLFVVIV 427
RG+ R + + +LGL E S AIK+ A + K EL +VI+ S++++KAFF+WL+ +I+
Sbjct: 368 RGMARWYNLFGVLGLSEKSTDVAIKSLGAVMLKNTELVEVIETSLKSFKAFFQWLYSIIL 427
Query: 428 RQLDEQTPSEIVKINQQELSHIAEFLYNFDNVKVDSSDKPPDKLITFNLERLGQYLQNQE 487
R DE PS + K +QQ++ +A FL + D K F +ER+GQY +++
Sbjct: 428 RLSDEPVPSYVKKFSQQDILLLANFLKT--QLNTDEHGK-------FRIERVGQYFEDKP 478
Query: 488 LTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQAHLIETVTKVFDVVHK 547
LT+L DN + KF+ + + LKD+ + + ++SL+ L+ V F V +
Sbjct: 479 LTVLSSFGDNAFAKFV-EGSTVLKDSP--YMVSHSMEHSLLSLAKALVGNVNHTFKHVSE 535
Query: 548 DTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVN 607
G+ F+ + E Q+N ++Q T AF E ++ + +
Sbjct: 536 VIGESFTCKGLVTLGEAQMN----TPSVITQASMGTPPAQYIAFSIGEKLSEKLHLIKIE 591
Query: 608 IKE-RSCNIAVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEEN-- 664
+ SC V S L QN +Q+ D FY+P+ L+ + +++ +
Sbjct: 592 AETGNSCATTVN----ISKLGQNSEIEQEKSIFKFQDAMFYTPDSLTALMRDEKSDSDAE 647
Query: 665 TIFIQVPVKHLLENS--TELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEKMDGSRLAV 722
T+ +Q+P+ +L++NS + + T+ D+ L Q ++ L M +AV
Sbjct: 648 TVLVQIPL-NLIDNSYFRKFTLGDVRSNVTESLQMCDVGAWLTQ--FRRLAGMLSGSIAV 704
Query: 723 SGGRKVAVILSKSSRKVRVFEME 745
SG RKV +LS S R+V + +M+
Sbjct: 705 SGARKVTCVLSASRRRVIMLDMD 727
>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
Length = 1500
Score = 35.9 bits (79), Expect = 0.12
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 247 ADEINTVAHKHGQIVQLMTQLDQTMISITEAWEHILLEMDTKMAYYASSVHEGGVSADLL 306
A++ + + ++ QI L QL++T + TE E L + D+K+ YYA + V+ D
Sbjct: 937 AEQESVIQNQAMQITNLQEQLNRTKQTFTEL-ESRLTDADSKLEYYARN-----VNVDFE 990
Query: 307 ELLMLGTPSVDLQVYLLEKLTTNDLKKFGNSVELSYS 343
ELLM VD L KL N+LK SV +YS
Sbjct: 991 ELLMEREQEVD---SLRTKL--NELKLREESVGPNYS 1022
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 33.1 bits (72), Expect = 0.88
Identities = 16/80 (20%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 631 TDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTKSCI 690
+D+Q+ ++ D+QFY + E+EE ++ + +HL+E+ +L+ + +S
Sbjct: 2658 SDEQEISESSTGDVQFYPRPLIHKKAATVESEEERVYTEA-TEHLVEDEAKLDSSLESRS 2716
Query: 691 FTDRSVKKDIAPLLEQNVYK 710
F + + ++ L ++ ++
Sbjct: 2717 FEEEVEEMEVDEALSESAFR 2736
>SB_39076| Best HMM Match : ATP-synt_ab_C (HMM E-Value=1)
Length = 181
Score = 31.9 bits (69), Expect = 2.0
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 428 RQLDEQTPSEIVKINQQELSHIAEFLYNFDNVKVDSSDKPPDKLITFN----LERLGQYL 483
+QLDE+ + + ++E+ + + L++ V++++ + DKL +FN L R+GQY+
Sbjct: 7 KQLDEEVRRKKMIERREEIKKVMQGLFSVLEVELNAFIQFADKLDSFNTMYMLVRIGQYV 66
Query: 484 QNQELTILP 492
+ +L+ P
Sbjct: 67 ISNQLSGAP 75
>SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 560 RCHEDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKE 599
+CH + N NSL D T RLMS L +SNG E
Sbjct: 415 KCHLLPMTLNNLNSLNFIPKKDYTKDRLMSGMLQLSNGTE 454
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 30.7 bits (66), Expect = 4.7
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 26 LDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGIIYTVS 85
+ + ++ N VQ + KV+ LP + + RPDG LA G + +
Sbjct: 802 IQTVVVNPNIATVQTTKGLSDKVYFLPITADYVTQVIHSERPDGILLAFGGQTALNCGIE 861
Query: 86 VEDKGIIDKY 95
+ D+G++D+Y
Sbjct: 862 LRDRGVLDEY 871
>SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19)
Length = 674
Score = 29.9 bits (64), Expect = 8.2
Identities = 22/108 (20%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 602 YFLAVNIKERSCNIAVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPE- 660
+FL + ++ N+A C + + ++ ++PT +L+ + LS +
Sbjct: 99 FFLPLPLRSALSNMAAGLCELHVFGIF--LPEKLSKPTGYSELKDFVLNNLSSLDIGKAA 156
Query: 661 --NEENTIFIQVPVKHLLENSTEL-NINTKSCIFTDRSVKKDIAPLLE 705
+E N F++ + + T++ N++ SC+F+D + ++PLL+
Sbjct: 157 GLDELNGFFLKSVAPEIFRSLTKIFNLSVSSCVFSDPWKRAKVSPLLK 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,260,605
Number of Sequences: 59808
Number of extensions: 1049627
Number of successful extensions: 2232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 12
length of query: 782
length of database: 16,821,457
effective HSP length: 88
effective length of query: 694
effective length of database: 11,558,353
effective search space: 8021496982
effective search space used: 8021496982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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