Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001208-TA|BGIBMGA001208-PA|IPR011046|WD40-like
(782 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr... 47 4e-05
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei... 47 4e-05
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 40 0.009
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 40 0.009
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 34 0.44
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 34 0.44
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 31 2.4
U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protei... 30 5.5
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 30 5.5
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 30 5.5
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 30 5.5
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 30 5.5
Z75547-8|CAA99901.1| 402|Caenorhabditis elegans Hypothetical pr... 30 7.2
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 30 7.2
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 30 7.2
AF022978-3|AAG24182.2| 403|Caenorhabditis elegans Hypothetical ... 30 7.2
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 30 7.2
Z72502-5|CAA96589.1| 750|Caenorhabditis elegans Hypothetical pr... 29 9.5
>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
protein F54C8.3 protein.
Length = 1027
Score = 47.2 bits (107), Expect = 4e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 14 PYQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSL---------PPPKENGCVQAMA 64
P++V M +S++ DL+AL + GE+ + R W+ +W K + V A+
Sbjct: 20 PFKVSSMCFSSQNDLIALGSKTGEILLKRTSWKMIWKTNINMIQAVGTECKLDSSVSALH 79
Query: 65 WRPDGKALAIGYNLGIIYTVSVE 87
+ PDG+ LA + GII+ + VE
Sbjct: 80 FSPDGRFLAAATSKGIIHLLDVE 102
>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
protein.
Length = 1027
Score = 47.2 bits (107), Expect = 4e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 14 PYQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSL---------PPPKENGCVQAMA 64
P++V M +S++ DL+AL + GE+ + R W+ +W K + V A+
Sbjct: 20 PFKVSSMCFSSQNDLIALGSKTGEILLKRTSWKMIWKTNINMIQAVGTECKLDSSVSALH 79
Query: 65 WRPDGKALAIGYNLGIIYTVSVE 87
+ PDG+ LA + GII+ + VE
Sbjct: 80 FSPDGRFLAAATSKGIIHLLDVE 102
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 39.5 bits (88), Expect = 0.009
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 15 YQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKEN-GCVQAMAWRPDGKALA 73
Y + + W+ L A+ G I RL + WS K N G V A++W PDG LA
Sbjct: 228 YPITSISWNTDGTLFAV----GSHNILRLCDKSGWSHSLEKMNAGSVMALSWSPDGTQLA 283
Query: 74 IGYNLGIIYTVSVEDK 89
+G G+++ + DK
Sbjct: 284 VGTAAGLVFHAHIIDK 299
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 39.5 bits (88), Expect = 0.009
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 15 YQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKEN-GCVQAMAWRPDGKALA 73
Y + + W+ L A+ G I RL + WS K N G V A++W PDG LA
Sbjct: 228 YPITSISWNTDGTLFAV----GSHNILRLCDKSGWSHSLEKMNAGSVMALSWSPDGTQLA 283
Query: 74 IGYNLGIIYTVSVEDK 89
+G G+++ + DK
Sbjct: 284 VGTAAGLVFHAHIIDK 299
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 33.9 bits (74), Expect = 0.44
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 9/175 (5%)
Query: 274 ITEAWEHILLEMDTKMAYYASSVHEGGVSADLLELLMLGTPSVDLQVYLLEKLTTNDLK- 332
+ E W+ + + A A +GG S + + M+ S++ + +L K + ++
Sbjct: 618 LVEIWQDYTTQEEAAAAAKAGGGRKGGKSGSFMTVSMMYRESLNKLMTMLHKTHPHFIRC 677
Query: 333 KFGNSVELSYSTIQKLVLKQL--NIVGQSLVYYLAELRGLTRIED---RYKILGLEESSV 387
N + S LVL QL N V + + T+ D RY IL +E+
Sbjct: 678 IIPNEKKQSGMIDAALVLNQLTCNGVLEGIRICRKGFPNRTQHPDFVQRYAILAAKEAKS 737
Query: 388 TEAIKACC-AFLNKCLELQQVIDVSMR--NYKAFFRWLFVVIVRQLDEQTPSEIV 439
++ +K C A L + +Q+ D R + K FF+ V + L + ++I+
Sbjct: 738 SDDMKTCAGAILQALINQKQLNDEQFRIGHTKVFFKAGVVAHIEDLRDDKLNQII 792
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 33.9 bits (74), Expect = 0.44
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 9/175 (5%)
Query: 274 ITEAWEHILLEMDTKMAYYASSVHEGGVSADLLELLMLGTPSVDLQVYLLEKLTTNDLK- 332
+ E W+ + + A A +GG S + + M+ S++ + +L K + ++
Sbjct: 618 LVEIWQDYTTQEEAAAAAKAGGGRKGGKSGSFMTVSMMYRESLNKLMTMLHKTHPHFIRC 677
Query: 333 KFGNSVELSYSTIQKLVLKQL--NIVGQSLVYYLAELRGLTRIED---RYKILGLEESSV 387
N + S LVL QL N V + + T+ D RY IL +E+
Sbjct: 678 IIPNEKKQSGMIDAALVLNQLTCNGVLEGIRICRKGFPNRTQHPDFVQRYAILAAKEAKS 737
Query: 388 TEAIKACC-AFLNKCLELQQVIDVSMR--NYKAFFRWLFVVIVRQLDEQTPSEIV 439
++ +K C A L + +Q+ D R + K FF+ V + L + ++I+
Sbjct: 738 SDDMKTCAGAILQALINQKQLNDEQFRIGHTKVFFKAGVVAHIEDLRDDKLNQII 792
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 31.5 bits (68), Expect = 2.4
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 11/176 (6%)
Query: 274 ITEAWEHILLEMDTKMAYYASSVHEGGVSADLLELLMLGTPSVDLQVYLLEKLTTNDLKK 333
+ E W+ + + A A +GG S + + M+ S++ + +L K + ++
Sbjct: 618 LVEIWQDYTTQEEAAAAAKAGGGRKGGKSGSFMTVSMMYRESLNKLMTMLHKTHPHFIRC 677
Query: 334 FGNSVELSYSTI--QKLVLKQL--NIVGQSLVYYLAELRGLTRIED---RYKILGLEESS 386
+E S + LVL QL N V + + T+ D RY IL +E+
Sbjct: 678 I-IPIEKKQSGMIDAALVLNQLTCNGVLEGIRICRKGFPNRTQHPDFVQRYAILAAKEAK 736
Query: 387 VTEAIKACC-AFLNKCLELQQVIDVSMR--NYKAFFRWLFVVIVRQLDEQTPSEIV 439
++ +K C A L + +Q+ D R + K FF+ V + L + ++I+
Sbjct: 737 SSDDMKTCAGAILQALINQKQLNDEQFRIGHTKVFFKAGVVAHIEDLRDDKLNQII 792
>U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protein
1, isoform e protein.
Length = 527
Score = 30.3 bits (65), Expect = 5.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 543 DVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 589
DV HK +Y VL + + H DQL K + + + + + K L++
Sbjct: 230 DVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 276
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 30.3 bits (65), Expect = 5.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 543 DVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 589
DV HK +Y VL + + H DQL K + + + + + K L++
Sbjct: 264 DVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 310
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 30.3 bits (65), Expect = 5.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 543 DVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 589
DV HK +Y VL + + H DQL K + + + + + K L++
Sbjct: 361 DVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 407
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 30.3 bits (65), Expect = 5.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 543 DVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 589
DV HK +Y VL + + H DQL K + + + + + K L++
Sbjct: 424 DVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 470
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 30.3 bits (65), Expect = 5.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 29 LALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALA 73
+A G +H L K SLP NG + A+A+ DGK LA
Sbjct: 1219 VAFGGKNGTCVVHELRATKTHSLP--SHNGPIAAVAFSEDGKYLA 1261
>Z75547-8|CAA99901.1| 402|Caenorhabditis elegans Hypothetical
protein R11D1.7 protein.
Length = 402
Score = 29.9 bits (64), Expect = 7.2
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 387 VTEAIKACCAFLNKCLELQQVIDVSMRNY---KAFFRWLFVVIVRQLDEQTPSEIVKINQ 443
+T + A L K E +V+ ++R F+ W+FV+++ D + +E+ K +
Sbjct: 189 ITPKVVFLLAVLLKVTEDDEVLSGALRAILFISPFYNWIFVILINCQDPEKRTELKKSIE 248
Query: 444 QELSHIAEFLYNFDNVK--VDSSDKPPDKLITFNLER--LGQYLQNQELTILPEDE 495
+ L I NV+ SS+ P I NL + L + + Q + +P E
Sbjct: 249 RALRGIKTGPVPRINVQEPTSSSNLPSRSHIALNLMKNPLNSFNKLQRQSTIPAGE 304
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 29.9 bits (64), Expect = 7.2
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 629 NGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTKS 688
N T+DQ+ LL+ + S S + T + EN I Q V+H EN+ ++NI S
Sbjct: 1983 NTTNDQEKVAV-LLNEKIDS--IYSSLNTLAASMENEIISQELVRHT-ENAGKVNIKPIS 2038
Query: 689 CIFTDRSVKKDIAPLLEQNVYKVLEKMDGSRLAVSGGRKVAVILSKSSRKV 739
S K + L+Q + VLEKMD S++++ + I+SK+ R +
Sbjct: 2039 PRELVSSSFKITSSDLQQ-FFNVLEKMDWSQISLPA--QEHAIISKNVRSL 2086
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.9 bits (64), Expect = 7.2
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 629 NGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTKS 688
N T+DQ+ LL+ + S S + T + EN I Q V+H EN+ ++NI S
Sbjct: 1983 NTTNDQEKVAV-LLNEKIDS--IYSSLNTLAASMENEIISQELVRHT-ENAGKVNIKPIS 2038
Query: 689 CIFTDRSVKKDIAPLLEQNVYKVLEKMDGSRLAVSGGRKVAVILSKSSRKV 739
S K + L+Q + VLEKMD S++++ + I+SK+ R +
Sbjct: 2039 PRELVSSSFKITSSDLQQ-FFNVLEKMDWSQISLPA--QEHAIISKNVRSL 2086
>AF022978-3|AAG24182.2| 403|Caenorhabditis elegans Hypothetical
protein T01G6.6 protein.
Length = 403
Score = 29.9 bits (64), Expect = 7.2
Identities = 23/114 (20%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 485 NQELTILPEDEDNTWHKFLQDNACFLKDND---TFFSMKDFKKYSLVQQQAHLIETVTKV 541
N+++ E+ D+ H + D L ++ TF + + Y+ ++Q H++ + K
Sbjct: 276 NEQIQFFLENSDDWVHNEVVDLIVELNPSEIEMTFMTCQFCFHYAGKREQGHILSVMEKY 335
Query: 542 FDVVHKDTGKYFSVLCNIRCHEDQLNKNLH-NSLRVSQVFDDTNKRLMSAFLDI 594
D++ D +Y+ IR + +++ K + N+ +++ KR ++ DI
Sbjct: 336 LDLISNDLHRYYQDK-GIRNYTERVTKMMKINNWLQKIIWEKRWKRELAEKFDI 388
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 29.9 bits (64), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 38 VQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGIIYTVS 85
V I + Q+VWS P V W PD + L +G++ G I +S
Sbjct: 136 VLIGSANGQRVWSNSFPLP-AAVTCGVWAPDSRQLVLGFSTGTIQVLS 182
>Z72502-5|CAA96589.1| 750|Caenorhabditis elegans Hypothetical
protein C08B6.7 protein.
Length = 750
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 28 LLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGIIYTVSVE 87
++A ++ G ++I H Q++ ++ G + ++W PD K +A G ++ SV
Sbjct: 319 MMATVSHDGFLRIFNYHAQELLAVMKSYFGGLL-TLSWSPDAKLIATGGEDDLLTVYSVA 377
Query: 88 DKGII 92
+K ++
Sbjct: 378 EKRVV 382
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,622
Number of Sequences: 27539
Number of extensions: 827338
Number of successful extensions: 2041
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2021
Number of HSP's gapped (non-prelim): 27
length of query: 782
length of database: 12,573,161
effective HSP length: 87
effective length of query: 695
effective length of database: 10,177,268
effective search space: 7073201260
effective search space used: 7073201260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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