GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001208-TA|BGIBMGA001208-PA|IPR011046|WD40-like
         (782 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    31   0.048
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    31   0.048
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    31   0.048
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.44 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   3.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   3.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   7.2  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 30.7 bits (66), Expect = 0.048
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 216 DDFSVMQVLYVDRLTNNVFLAIVNTGVLSAYADEINTV 253
           D+ +V ++L+ DRL NN F  +++ G  +A  +E+  V
Sbjct: 30  DNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRV 67


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 30.7 bits (66), Expect = 0.048
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 216 DDFSVMQVLYVDRLTNNVFLAIVNTGVLSAYADEINTV 253
           D+ +V ++L+ DRL NN F  +++ G  +A  +E+  V
Sbjct: 30  DNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRV 67


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 30.7 bits (66), Expect = 0.048
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 216 DDFSVMQVLYVDRLTNNVFLAIVNTGVLSAYADEINTV 253
           D+ +V ++L+ DRL NN F  +++ G  +A  +E+  V
Sbjct: 30  DNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRV 67


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.44
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 505 DNACFLKDNDTFFSMKDFKKYSLVQQQAHLIETVTKVFDVVHKDTGKYFSVLCNIRCHED 564
           +NAC LK+ + F    D+  YS V +     +   K      K+    F +     C++ 
Sbjct: 482 ENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLK-----EKENEIDFKIEVTEDCNK- 535

Query: 565 QLNKNLHNSLRVSQVFDDTNKRLMSA 590
             N  L     + Q++ DT+ +L+ A
Sbjct: 536 SFNDLLTQVAELDQIYADTHAKLVQA 561


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 210 LDVNMSDDFSVMQVL-----YVDRLTNNVFLAIVNTGVLSAYADEINTV 253
           +D  M  D   +Q+L      +DR+ +N FL + N   L    +++ TV
Sbjct: 350 IDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTV 398


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 60  VQAMAWRPDGKALAIGYNLGIIYTVSVEDKGI 91
           ++ ++W  DGK L +   +  I +V  EDKG+
Sbjct: 336 IKTVSWLKDGKPLGLEEAVLRIESVKKEDKGM 367



 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 116  IVWAIRTDILQSATEYNLYDDASIFLQKV 144
            + W +R  +LQS+       + S+F+++V
Sbjct: 1308 VTWKVRGAVLQSSDRLRQLPEGSLFIKEV 1336


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 581 DDTNKRLMSAFLDISNGKEGIYFLAVNIKERSCNIAVMKCYFSSYLVQNGTDD 633
           +D ++  +   + ISN K   +FLA  ++E +C  + +         QNG  D
Sbjct: 436 EDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQNGRKD 488


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/32 (25%), Positives = 21/32 (65%)

Query: 518 SMKDFKKYSLVQQQAHLIETVTKVFDVVHKDT 549
           ++ +FK  ++ Q + H+ +T+ K+ + + +DT
Sbjct: 162 NITNFKNSNIFQLKQHMRDTMNKIAETLDEDT 193


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 763 IGKFQNTPDKSNTTNEDNIF 782
           +G  Q+TPD + T  E N++
Sbjct: 27  LGFVQSTPDNNKTVREFNVY 46


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,680
Number of Sequences: 429
Number of extensions: 9398
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 12
length of query: 782
length of database: 140,377
effective HSP length: 63
effective length of query: 719
effective length of database: 113,350
effective search space: 81498650
effective search space used: 81498650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)