GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001208-TA|BGIBMGA001208-PA|IPR011046|WD40-like
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21530.1 68417.m03111 transducin family protein / WD-40 repea...    92   1e-18
At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P4...    33   0.55 
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    33   0.73 
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    31   2.9  
At5g16920.1 68418.m01983 expressed protein                             31   3.9  
At3g03490.1 68416.m00347 peroxisomal protein PEX19 family protei...    31   3.9  
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ...    30   5.1  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    29   9.0  

>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
           family protein contains 1 WD-40 repeat (PF00400);
           similar to anaphase-promoting complex subunit 4
           GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
          Length = 510

 Score = 91.9 bits (218), Expect = 1e-18
 Identities = 107/496 (21%), Positives = 206/496 (41%), Gaps = 66/496 (13%)

Query: 10  ERHVPYQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDG 69
           ++ +P+Q+ +  W+   DLLA+     ++ +HR +WQ++W++ P K    V ++ WRPDG
Sbjct: 20  DKPIPFQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISPGKP---VTSLCWRPDG 76

Query: 70  KALAIGYNLGIIYTVSVEDKGIIDKYXXXXXXXXXXXXAKYSGISCIVW-AIRTDILQSA 128
           KA+A+G   G I    VE+  ++                    + C+ W          +
Sbjct: 77  KAIAVGLEDGTISLHDVENGKLLRNLKPHDV-----------AVVCLNWEEDGQSNTDES 125

Query: 129 TEYNLYDD-ASIFLQKVP-------MSSGYKNSHEDNKD-CKYIQNPT--QLNMLIVGYG 177
             +++Y+D  S F    P       + +G  +  +D +D    + N +  + N+L  G  
Sbjct: 126 GNFSVYEDRTSRFFPPAPRPPKMPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTGDR 185

Query: 178 TGNIYLNMYGRYPYGTI-----QLAEVAKDDFGEYKVLDVNMSDDFSVMQVLYVDRLTNN 232
            GNI  +++G +  G I      L  +     GE K  D+   ++   +Q L        
Sbjct: 186 DGNICFSIFGIFQIGKIVALSKDLCRLVVMCTGELKDCDIKPREEKINVQDL------PG 239

Query: 233 VFLAIVNTGVLSAYADEINTVAHKHGQIVQLMTQLDQTMISITEAWEHILLEMDTKMAYY 292
           +    ++T +      E++ VA +   I  L   +  ++  + + W   +     K    
Sbjct: 240 LHCLAMDTSIFWKRKYELHQVAQQASNIEDLTEVIRASLSVMNKQWADAMKTFHEKFHSL 299

Query: 293 ASSVHEGGVSADLLELL--MLGTPSVDLQVYL-----------LEKLTTNDLKKFGNSVE 339
           ++ + + G+       +  +LG  S   + +L           L +   N L +  +   
Sbjct: 300 STLIIDNGICHYQFGFVAFLLGLESSPQEEFLSLLGGARISPALNQFLVNSLGEVVSFTC 359

Query: 340 LSYSTIQKLVLKQLNIVGQSLV---------------YYLAELRGLTRIEDRYKILGLEE 384
           L +    K VLK +   G+ L                + + ELRGL+R   RY+ +GL+E
Sbjct: 360 LIFFRGVKRVLKSVCGTGKELQQVVLDHLQPAAEIIGFRIGELRGLSRWRARYQGIGLDE 419

Query: 385 SSVTEAIKACCAFLNKCLELQQVIDVSMRNYKAFFRWLFVVIVRQLDEQTPSEIVKINQQ 444
             + EA +     L +      V+   ++ +  FF WL V  ++ L ++   +++  N +
Sbjct: 420 MLLNEATENTGLLLVQVQRFMMVLSSVVQQFSNFFNWL-VRSIKYLMQEPNDQLLSYNSE 478

Query: 445 ELSHIAEFLYNFDNVK 460
            L    +FLY+ D VK
Sbjct: 479 LLVVFLKFLYDQDPVK 494


>At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to
           SP|P42498 Phytochrome E {Arabidopsis thaliana}
          Length = 1112

 Score = 33.5 bits (73), Expect = 0.55
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 550 GKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVNIK 609
           G+ F V C ++C +D L K L  SL      D+  +  +  F +    KEG Y  A    
Sbjct: 781 GEVFGVFCKVKC-QDSLTKFL-ISLYQGIAGDNVPESSLVEFFN----KEGKYIEASLTA 834

Query: 610 ERSCNI--AVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIF 667
            +S NI   V++C+F   ++   +     E    L     S   L+ +    +N  N I 
Sbjct: 835 NKSTNIEGKVIRCFFFLQIINKESGLSCPE----LKESAQSLNELTYVRQEIKNPLNGI- 889

Query: 668 IQVPVKHLLENSTELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEK 714
                 H L  S+E++ + +  + T  + +K I  ++E    K +E+
Sbjct: 890 ---RFAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIEE 933


>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 33.1 bits (72), Expect = 0.73
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 646 FYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTKSC-IFTDRSVKKDIAPLL 704
           F SP  ++ +   PE    T F +V V HL   ST    ++  C I +  S + +   + 
Sbjct: 22  FLSPLRVASLLVFPEKSSATFFRRVQVPHLFSTSTTTLFSSVKCSIHSTSSPETENQAVF 81

Query: 705 EQNVYKVLEK 714
             NV  +LE+
Sbjct: 82  RPNVVDILEE 91


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 628 QNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTK 687
           + GT+  Q    ++ +L    P   S+  +  E  EN IF++   KHL +  ++LNIN+K
Sbjct: 521 KTGTERIQGMTLHMCEL----PRAASIDGSAFEQMENLIFLKF-FKHLNDRESKLNINSK 575

Query: 688 SCIFTDRSVK 697
           + +   RS++
Sbjct: 576 NRMVLPRSLR 585


>At5g16920.1 68418.m01983 expressed protein
          Length = 256

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 592 LDISNGKEGIYFLA-VNIKERS-CNIAVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYS 648
           L+ISNG    YFL  V I  R+ C++  +KC+    ++Q+ +    + P N   L F S
Sbjct: 127 LEISNGGRSNYFLNNVKIISRNICSLGSIKCHGIDGILQSPSTVDDDSPRNNHTLPFIS 185


>At3g03490.1 68416.m00347 peroxisomal protein PEX19 family protein
           contains Pfam profile: PF04614 Pex19 protein family
          Length = 248

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 509 FLKDNDTFFSMKDFKKYSLVQQQAHLIETVTKVFDVVHKDTGKYFSVL 556
           +LK+N+   S +D+K+YS   QQ  LIE +  V++    ++ K   ++
Sbjct: 161 WLKENEASLSKEDYKRYS---QQYKLIEELNAVYENEPNNSSKIMEIM 205


>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
           phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
           contains Pfam profiles PF02453: Reticulon, PF00533:
           BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
           factor
          Length = 1011

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 339 ELSYSTIQKLVLKQLNIVGQSLVYYLAEL--RGLTRIEDRYKILGLEESSVTEAIKACCA 396
           +L++S I   V+  + ++   L++ L  L  RG+   E+R+K++G+ E  V   ++    
Sbjct: 367 DLNFSFIS--VVAYMGLIYLGLMFVLKSLIHRGMVE-EERHKVVGVREEDVKRMLRLIMP 423

Query: 397 FLNKCL 402
           +LN+ L
Sbjct: 424 YLNESL 429


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 341 SYSTIQKLVLKQLNIVGQSLVYYLAELRGLTRIEDRYKILGLEESSVTEAIK 392
           ++ST   L L  L +V   L+YY   +    ++ D + ILGLE       IK
Sbjct: 65  NFSTWSNLTLVLLWVVMIFLIYYTKNMSREAQVFDPFSILGLEPGVTDSEIK 116


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,100,838
Number of Sequences: 28952
Number of extensions: 769508
Number of successful extensions: 1779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1774
Number of HSP's gapped (non-prelim): 10
length of query: 782
length of database: 12,070,560
effective HSP length: 87
effective length of query: 695
effective length of database: 9,551,736
effective search space: 6638456520
effective search space used: 6638456520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)