GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001207-TA|BGIBMGA001207-PA|undefined
         (81 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7LPI2 Cluster: Putative uncharacterized protein; n=1; ...    31   5.8  
UniRef50_Q94071 Cluster: Liprin-beta; n=2; Caenorhabditis|Rep: L...    31   5.8  

>UniRef50_A7LPI2 Cluster: Putative uncharacterized protein; n=1;
          Caenorhabditis elegans|Rep: Putative uncharacterized
          protein - Caenorhabditis elegans
          Length = 962

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 32 VCFRPEDITMLIDTLQRTQLDAFRELLDSVRQSA 65
          VC  PED T+ + + Q + +DAF  L+D  R S+
Sbjct: 14 VCILPED-TLTVSSSQNSHIDAFAALVDRERDSS 46


>UniRef50_Q94071 Cluster: Liprin-beta; n=2; Caenorhabditis|Rep:
          Liprin-beta - Caenorhabditis elegans
          Length = 920

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 32 VCFRPEDITMLIDTLQRTQLDAFRELLDSVRQSA 65
          VC  PED T+ + + Q + +DAF  L+D  R S+
Sbjct: 14 VCILPED-TLTVSSSQNSHIDAFAALVDRERDSS 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,156,852
Number of Sequences: 1657284
Number of extensions: 1493902
Number of successful extensions: 3659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3659
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 575,637,011
effective HSP length: 60
effective length of query: 21
effective length of database: 476,199,971
effective search space: 10000199391
effective search space used: 10000199391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)