GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001207-TA|BGIBMGA001207-PA|undefined
         (81 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu...    24   2.2  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    24   2.2  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    23   3.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    23   5.1  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    23   5.1  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    23   5.1  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    23   6.7  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    22   8.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    22   8.9  

>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
           Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 35  RPEDITMLIDTLQRTQLDAFRELLDSVRQSATP 67
           +P D+  L + LQ+ Q D   +++  V ++ TP
Sbjct: 171 KPVDMDKLAEGLQKLQEDDLLQVVQMVNENKTP 203


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 51  LDAFRELLDSVRQSATPTFDHQISYLVPVT 80
           L++F+ L DS+R  +T    H   Y +PV+
Sbjct: 395 LNSFKNL-DSLRDMSTQINKHYTGYFIPVS 423


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 55  RELLDSVRQSATPTFDHQISYLVPVT 80
           R+LL  +  +   TF H +++LV VT
Sbjct: 182 RQLLTGIPITPFETFSHPVAHLVVVT 207


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 33  CFRPEDITMLIDTLQRTQLDAFRELLDSVRQSATPTFDHQI 73
           C + E  ++ ++ L + +++A R+    +    TPT D +I
Sbjct: 89  CNQTEYASVFLEYLPQCKVEAIRKYEAELAAGKTPTIDPEI 129


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 36  PEDITMLIDTLQRTQLDAFRELLDSVRQSATPTF 69
           PED+   +DTL +    AF  L+ S   +  P F
Sbjct: 326 PEDVPSPMDTLSQANYGAF-ALIKSFPSTPVPDF 358


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 34  FRPEDITMLIDTLQRTQLDA 53
           FRPE+I +L+D  Q+  L +
Sbjct: 183 FRPENIHVLVDMTQQVGLSS 202


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 47  QRTQLDAFRELLDSVRQSATPTFDHQISY 75
           +  Q    RE  DS++ +   TFD Q+++
Sbjct: 762 RNNQYVTLRENFDSLQNAIMETFDKQVTH 790


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 106

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 32 VCFRPEDITMLI 43
          VC++PED T +I
Sbjct: 11 VCYQPEDTTFII 22


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 46  LQRTQLDAFRELLDSVRQSATP--TFDHQISYLVPVTK 81
           L  +Q D+F +++  +RQ +TP  +F  +  +L+ V++
Sbjct: 334 LPSSQNDSFDDVVACLRQKSTPYLSFIKKARHLIQVSR 371


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,918
Number of Sequences: 5004
Number of extensions: 6560
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 9
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)