GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001207-TA|BGIBMGA001207-PA|undefined
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597...    26   4.4  

>03_04_0169 -
           17959262-17959304,17959441-17959532,17959682-17959759,
           17959938-17960075,17960174-17960302,17960556-17960685,
           17960797-17960974,17961177-17961315,17961399-17961488,
           17961633-17961794,17961966-17962130,17962250-17962387,
           17962827-17963006,17963405-17963533,17963878-17964113,
           17964233-17964395,17965260-17965628,17965724-17965828
          Length = 887

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 36  PEDITMLIDTLQRT--QLDAFRELLDSVRQSATPTFDHQISYLVPVTK 81
           PE +  LI T Q    Q+D  RE+ + V  +A  T  ++I  ++ V +
Sbjct: 717 PEIMVPLIGTPQELAQQVDVIREVAEKVFANAETTISYKIGSMIEVPR 764


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,655
Number of Sequences: 37544
Number of extensions: 37782
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 1
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)