GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001207-TA|BGIBMGA001207-PA|undefined
         (81 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78546-3|CAB01771.3|  920|Caenorhabditis elegans Hypothetical pr...    31   0.13 
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    25   4.8  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    25   4.8  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   6.3  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   6.3  

>Z78546-3|CAB01771.3|  920|Caenorhabditis elegans Hypothetical
          protein T21H8.1 protein.
          Length = 920

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 32 VCFRPEDITMLIDTLQRTQLDAFRELLDSVRQSA 65
          VC  PED T+ + + Q + +DAF  L+D  R S+
Sbjct: 14 VCILPED-TLTVSSSQNSHIDAFAALVDRERDSS 46


>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
            T23F2.2b protein.
          Length = 1538

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 35   RPEDITMLIDTLQRTQLDA-FRELLDSVRQSATPTFDHQISYL 76
            +P+   ML    +  +L A  ++LL  V   ATP +D QI  L
Sbjct: 1411 KPDSSKMLELEQETEELKATVKDLLQRVSHVATPNYDRQIELL 1453


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
            T23F2.2a protein.
          Length = 1534

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 35   RPEDITMLIDTLQRTQLDA-FRELLDSVRQSATPTFDHQISYL 76
            +P+   ML    +  +L A  ++LL  V   ATP +D QI  L
Sbjct: 1407 KPDSSKMLELEQETEELKATVKDLLQRVSHVATPNYDRQIELL 1449


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 35    RPEDITMLIDTLQRTQLDAFRELLD 59
             RP    +L+D   R   D FR +LD
Sbjct: 12606 RPYHFNILVDITSRASADEFRRVLD 12630


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 35    RPEDITMLIDTLQRTQLDAFRELLD 59
             RP    +L+D   R   D FR +LD
Sbjct: 12606 RPYHFNILVDITSRASADEFRRVLD 12630


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,403
Number of Sequences: 27539
Number of extensions: 36615
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 12,573,161
effective HSP length: 61
effective length of query: 20
effective length of database: 10,893,282
effective search space: 217865640
effective search space used: 217865640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)