GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001207-TA|BGIBMGA001207-PA|undefined
         (81 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   3.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   4.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   7.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   7.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 53  AFRELLDSVRQSATPTFDHQ 72
           A+R+L   +RQ  T  F+H+
Sbjct: 400 AYRKLPREMRQRITEYFEHR 419


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 53  AFRELLDSVRQSATPTFDHQ 72
           A+R+L   +RQ  T  F+H+
Sbjct: 368 AYRKLPREMRQRITEYFEHR 387


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.8 bits (39), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 64  SATPTFDHQISY 75
           +A PT+ H+I+Y
Sbjct: 193 NAFPTYTHEITY 204


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 33  CFRPEDITMLIDTLQRTQLDAFRELLDSVRQ 63
           C + +DI   +   +  ++D FR   +  RQ
Sbjct: 147 CVKKKDIEEALKIREEIRVDPFRTGFEHKRQ 177


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 33  CFRPEDITMLIDTLQRTQLDAFRELLDSVRQ 63
           C + +DI   +   +  ++D FR   +  RQ
Sbjct: 147 CVKKKDIEEALKIREEIRVDPFRTGFEHKRQ 177


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,516
Number of Sequences: 429
Number of extensions: 392
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 140,377
effective HSP length: 47
effective length of query: 34
effective length of database: 120,214
effective search space:  4087276
effective search space used:  4087276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)