GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001207-TA|BGIBMGA001207-PA|undefined
         (81 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera...    27   1.2  
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    27   2.1  
At5g11290.1 68418.m01318 expressed protein contains Pfam profile...    26   2.7  
At5g64780.1 68418.m08145 expressed protein similar to unknown pr...    25   4.8  

>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 450

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 35  RPEDITMLIDTLQRTQLDAFRELLDSVRQSA 65
           R  DIT+L+  L R+    FRE L  + QSA
Sbjct: 70  RTHDITLLLTLLNRSCESPFRECLTKLLQSA 100


>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
           class), putative (RPS4) domain signature TIR-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS4 (GI:11357255). False intron created at
           intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 39  ITMLIDTLQRTQLDAFRELLDSVRQ 63
           + +L D  +R Q+DA RE+LD +++
Sbjct: 310 LVVLDDVSKREQIDALREILDWIKE 334


>At5g11290.1 68418.m01318 expressed protein contains Pfam profile
          PF03140: Plant protein of unknown function
          Length = 353

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 38 DITMLIDTLQRTQLDAFRELLDSV--RQSATPTFDHQISYL 76
          D + L++ L R+Q D +R +LD +  +Q      +H +  L
Sbjct: 56 DASFLVELLLRSQFDVYRGMLDRIYGKQKMIVDVNHDVMLL 96


>At5g64780.1 68418.m08145 expressed protein similar to unknown
          protein (pir||T04031)
          Length = 175

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 43 IDTLQRTQLDAFRELLDSVRQSATPTFDHQ-ISYL 76
          +D + RT   AFR   +S+ Q  T   +HQ +S+L
Sbjct: 12 LDEVDRTMYGAFRGAANSLSQLYTHAMNHQRVSFL 46


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,554
Number of Sequences: 28952
Number of extensions: 31995
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 4
length of query: 81
length of database: 12,070,560
effective HSP length: 60
effective length of query: 21
effective length of database: 10,333,440
effective search space: 217002240
effective search space used: 217002240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)