GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001206-TA|BGIBMGA001206-PA|IPR002423|Chaperonin
Cpn60/TCP-1, IPR012716|T-complex protein 1, beta subunit,
IPR008950|GroEL-like chaperone, ATPase, IPR002194|Chaperonin TCP-1,
IPR001844|Chaperonin Cpn60
         (536 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   3.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   3.1  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/67 (22%), Positives = 25/67 (37%)

Query: 450 AVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMKKLGVTESYVVKRQVLLSAA 509
           A+  ++G     L+  L  H S      GL   NG     K L    +YV +  + +   
Sbjct: 108 AILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167

Query: 510 EAAEMIL 516
              E ++
Sbjct: 168 TVKEHLI 174


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/67 (22%), Positives = 25/67 (37%)

Query: 450 AVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMKKLGVTESYVVKRQVLLSAA 509
           A+  ++G     L+  L  H S      GL   NG     K L    +YV +  + +   
Sbjct: 108 AILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167

Query: 510 EAAEMIL 516
              E ++
Sbjct: 168 TVKEHLI 174


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,216
Number of Sequences: 317
Number of extensions: 3264
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 536
length of database: 114,650
effective HSP length: 60
effective length of query: 476
effective length of database: 95,630
effective search space: 45519880
effective search space used: 45519880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)