GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001206-TA|BGIBMGA001206-PA|IPR002423|Chaperonin
Cpn60/TCP-1, IPR012716|T-complex protein 1, beta subunit,
IPR008950|GroEL-like chaperone, ATPase, IPR002194|Chaperonin TCP-1,
IPR001844|Chaperonin Cpn60
         (536 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    26   2.2  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   5.1  

>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 377 RGATQQVIDEAERSLHDALCVLAATV 402
           R   Q+VI     + HDA+CVLA  +
Sbjct: 791 RPVVQRVISSFRTTSHDAVCVLAGMI 816


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 61  EVTNDGATILKSIGVD-NPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQK 119
           +V  D     +++ VD NP      D + + D+E  D   ++T+          K +++K
Sbjct: 683 DVQIDRTRFEEAVPVDLNPTIYYGPDYTVILDKEFEDDRVAITIRNLLGGTDGPKAMKEK 742

Query: 120 LH 121
           LH
Sbjct: 743 LH 744


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.133    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 411,443
Number of Sequences: 2123
Number of extensions: 14651
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 3
length of query: 536
length of database: 516,269
effective HSP length: 67
effective length of query: 469
effective length of database: 374,028
effective search space: 175419132
effective search space used: 175419132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)