GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001205-TA|BGIBMGA001205-PA|IPR002110|Ankyrin,
IPR001660|Sterile alpha motif SAM, IPR010993|Sterile alpha motif
homology
         (361 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          30   0.086
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   1.9  
AF513639-1|AAM53611.1|  195|Anopheles gambiae glutathione S-tran...    26   1.9  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   9.9  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 30.3 bits (65), Expect = 0.086
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 139 ILNIGDRYGQTPLMRAISSGRVAVAQKLLDMQVNIEMRDQHGWTAVFWAVHHNQPEILE- 197
           +L++ +   +T L  A+S     + + LL     +   D  G T +  AV  N P+++  
Sbjct: 776 LLDLPNDRNETGLHLAVSCNSEPIVKALLGAGAKLHYCDYRGNTPLHRAVVENVPDMVRL 835

Query: 198 MLIEKGARLTEVDKSNRTLLEIA 220
           +L++ G RL   +    T L+ A
Sbjct: 836 LLLQGGLRLDCTNDDGLTALQAA 858


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 151 LMRAISSGRVAVAQKLLDM-QVNIEMRDQHGWTAVFWAVHHNQPEILEMLIEKGA 204
           L  A+  G +  A+ +L+   V++   +  G T +  AV  N   + +ML+++GA
Sbjct: 431 LFSAVEHGHLEKARTILESTDVDVNSLNSDGLTPLDVAVLSNNRSMTKMLLQQGA 485


>AF513639-1|AAM53611.1|  195|Anopheles gambiae glutathione
           S-transferase S1-2 protein.
          Length = 195

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 230 EILKKSLNLDDDHKTDENSYLNHQLTSWQDYY 261
           E++   L   DD   D N YL +   SW D Y
Sbjct: 116 EVIPFYLEKLDDIARDNNGYLANSKLSWADIY 147


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 225 HQVIIEILKKSLNLDDDHKTDENS 248
           H+V IE+L K L ++   K DE S
Sbjct: 341 HRVFIELLPKVLCIERPKKEDEPS 364


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,058
Number of Sequences: 2123
Number of extensions: 16185
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 516,269
effective HSP length: 65
effective length of query: 296
effective length of database: 378,274
effective search space: 111969104
effective search space used: 111969104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)