GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001205-TA|BGIBMGA001205-PA|IPR002110|Ankyrin,
IPR001660|Sterile alpha motif SAM, IPR010993|Sterile alpha motif
homology
         (361 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   1.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   1.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   1.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   5.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   5.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   5.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 8   GFSDEDSDSDDYGFYEKPVRNYDYSSQIS---SKKKVEVALQEAIINGNMKDVEDLINNE 64
           GF++++ D DD   YE    + DY +Q +    +KK   A ++       K  E  I  E
Sbjct: 102 GFNNKNKDGDDNNDYE----DNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPE 157

Query: 65  LKNNANIKLDSG 76
           L N+     ++G
Sbjct: 158 LPNDEKSLFENG 169


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 274 NEIQNLLYGMSCERLTPLIVTSGIDLRTFLLLDAEEMVKLGIEMPYER 321
           +E+Q ++ G  CE++   +V S   LR   +   +  + L +E  YER
Sbjct: 402 SEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTLQRCL-LSLEKTYER 448


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 274 NEIQNLLYGMSCERLTPLIVTSGIDLRTFLLLDAEEMVKLGIEMPYER 321
           +E+Q ++ G  CE++   +V S   LR   +   +  + L +E  YER
Sbjct: 440 SEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTLQRCL-LSLEKTYER 486


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 50  INGNMKDVEDLINNELKNNANIKLD 74
           I G +KD+EDL     K N  + LD
Sbjct: 93  IFGTIKDLEDLTAEAKKQNLKVILD 117


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 252 HQLTSWQDYYPGIEKNERPNYKNEIQNLLYGMSCERLTPLIV 293
           H   +W  Y   +  N  P Y +EI   L+GM      PL+V
Sbjct: 180 HPNVTW--YSQCVTFNAFPTYTHEITYSLFGMIMMYWFPLVV 219


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 268 ERPNYKNEIQNLLYGMSCERLTPLIVTSGI 297
           + P +++ I+N++ G S      LIV +GI
Sbjct: 91  DAPGHRDFIKNMITGTSQADCAVLIVAAGI 120


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 64 ELKNNANIKLDSGWTPLMHACFHAQDKIVQYLLE 97
          ELK N    L++  +P         DK+VQ+L++
Sbjct: 62 ELKRNLPDALENECSPCSEKQKKIADKVVQFLID 95


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 64 ELKNNANIKLDSGWTPLMHACFHAQDKIVQYLLE 97
          ELK N    L++  +P         DK+VQ+L++
Sbjct: 62 ELKRNLPDALENECSPCSEKQKKIADKVVQFLID 95


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,902
Number of Sequences: 429
Number of extensions: 4908
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 361
length of database: 140,377
effective HSP length: 59
effective length of query: 302
effective length of database: 115,066
effective search space: 34749932
effective search space used: 34749932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)