Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
         (234 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.2  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.2  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 125 FACQQCNHRFCVGD 138
           FAC  CN RF   D
Sbjct: 375 FACPICNKRFMRSD 388


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 105 VIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGD 138
           +IP    + R ++++Y + C  C       C  D
Sbjct: 484 IIPKVLAMSRDQNYLYRMTCLFCINVLAEACGSD 517


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 99  CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRF 134
           C  CN+      ++   +      + F CQ+C+ RF
Sbjct: 137 CEVCNRSFGYKHVLQNHERTHTGEKPFECQECHKRF 172


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.140    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,366
Number of Sequences: 317
Number of extensions: 2147
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 234
length of database: 114,650
effective HSP length: 55
effective length of query: 179
effective length of database: 97,215
effective search space: 17401485
effective search space used: 17401485
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)