Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
(234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 62 7e-11
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 45 8e-06
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 42 8e-05
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 1.8
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.5
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 62.1 bits (144), Expect = 7e-11
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 32 ARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD------LMLC 85
+++CA CG+VI+ +++ +A+ +H +C +C C+ V SK + D + LC
Sbjct: 113 SKICASCGQVISGQYV-RALGNIYHLECFRCHDCNSL---VASKFFPIDDPTLNKQVPLC 168
Query: 86 KRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDN 145
+ DY R C +C + + + K F H+E F C C F D +Y +
Sbjct: 169 ETDYFRRLDLL--CASCGMALRGYYITALNKKF--HIEHFTCSLCYTVFGPNDSYYEYEG 224
Query: 146 KILCEYDY 153
K+ C Y Y
Sbjct: 225 KVYCHYHY 232
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 45.2 bits (102), Expect = 8e-06
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 28 STGGARLCAQCGKVITERFL-LKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LMLC 85
S+ G+ +C +CG+ R + WH+DC C CD L L +D +C
Sbjct: 12 SSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVC 71
Query: 86 KRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDN 145
C AC I + ++ S YH ECF C C + + F +
Sbjct: 72 S-------SCAHTCTACRMRIKDYALMSGYDS--YHRECFRCHDCRKQI-IDSNFKRDNR 121
Query: 146 KILC 149
I C
Sbjct: 122 TIFC 125
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 41.9 bits (94), Expect = 8e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 6/122 (4%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
C CG + ++ A + H C KC C L VG YY+ C DY F
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVG--FYYREGKFYCHLDYHEQF- 314
Query: 95 ATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 154
+ C C P + + + +H C C+ F V D+ C+ Y+
Sbjct: 315 -SPRCKHCK--TPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYD 371
Query: 155 ER 156
+
Sbjct: 372 NK 373
Score = 37.1 bits (82), Expect = 0.002
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
C C I ++ + ++HE+ C C + V Y+ DL C+ Y +
Sbjct: 318 CKHCKTPIEDQ-AVHINNDWFHENHHFCAGCS-EVFNVNIPCIYRDDLYWCQTCYDNKYA 375
Query: 95 ATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDR-FYLCDNKILC 149
C C K P + ++ YH +C+ C CN +GD +++ +N +C
Sbjct: 376 V--KCKKCRK--PILGISVKGSDGEYHSQCWTCGACN--ALLGDEGYFMIENTPIC 425
>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 126
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 65 CDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGN 98
CDC + EV S AD + +YLR A N
Sbjct: 62 CDCPISEVPSAKQKLADSLFTSHEYLRQTSAEAN 95
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRL 69
C +C + + + + WH DC KC C+ +L
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKL 58
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 99 CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHR 133
C+ C + +P+ V +H +CF C CN +
Sbjct: 24 CIKCWESVPSTSQVWFGGK-CWHSDCFKCVNCNKK 57
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 78 YKADLMLCKRDYLRLFGATGNCVACNKVIP---AFEMVMRAKSFV 119
++ +L RDY G + +C+ N ++P AF + +A+ F+
Sbjct: 242 FRTLFLLLIRDYSLFHGNSSHCMLANSMLPPSIAFSKMEKAEIFL 286
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 19 YSLSNNVASSTGGARLCAQCGKVI 42
Y+LS N++ STGG R C KVI
Sbjct: 524 YTLSTNLSPSTGG-RYSIGCVKVI 546
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.140 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,145
Number of Sequences: 5004
Number of extensions: 34835
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 11
length of query: 234
length of database: 2,362,478
effective HSP length: 71
effective length of query: 163
effective length of database: 2,007,194
effective search space: 327172622
effective search space used: 327172622
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)
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