GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    62   7e-11
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    45   8e-06
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      42   8e-05
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   1.8  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   9.5  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%)

Query: 32  ARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD------LMLC 85
           +++CA CG+VI+ +++ +A+   +H +C +C  C+     V SK +   D      + LC
Sbjct: 113 SKICASCGQVISGQYV-RALGNIYHLECFRCHDCNSL---VASKFFPIDDPTLNKQVPLC 168

Query: 86  KRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDN 145
           + DY R       C +C   +  + +    K F  H+E F C  C   F   D +Y  + 
Sbjct: 169 ETDYFRRLDLL--CASCGMALRGYYITALNKKF--HIEHFTCSLCYTVFGPNDSYYEYEG 224

Query: 146 KILCEYDY 153
           K+ C Y Y
Sbjct: 225 KVYCHYHY 232


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 28  STGGARLCAQCGKVITERFL-LKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LMLC 85
           S+ G+ +C +CG+    R   +      WH+DC  C  CD  L      L   +D   +C
Sbjct: 12  SSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVC 71

Query: 86  KRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDN 145
                        C AC   I  + ++    S  YH ECF C  C  +  +   F   + 
Sbjct: 72  S-------SCAHTCTACRMRIKDYALMSGYDS--YHRECFRCHDCRKQI-IDSNFKRDNR 121

Query: 146 KILC 149
            I C
Sbjct: 122 TIFC 125


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 35  CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
           C  CG  +    ++ A  +  H  C KC  C   L  VG   YY+     C  DY   F 
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVG--FYYREGKFYCHLDYHEQF- 314

Query: 95  ATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 154
            +  C  C    P  +  +   +  +H     C  C+  F V       D+   C+  Y+
Sbjct: 315 -SPRCKHCK--TPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYD 371

Query: 155 ER 156
            +
Sbjct: 372 NK 373



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 35  CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
           C  C   I ++  +     ++HE+   C  C   +  V     Y+ DL  C+  Y   + 
Sbjct: 318 CKHCKTPIEDQ-AVHINNDWFHENHHFCAGCS-EVFNVNIPCIYRDDLYWCQTCYDNKYA 375

Query: 95  ATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDR-FYLCDNKILC 149
               C  C K  P   + ++     YH +C+ C  CN    +GD  +++ +N  +C
Sbjct: 376 V--KCKKCRK--PILGISVKGSDGEYHSQCWTCGACN--ALLGDEGYFMIENTPIC 425


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 126

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 65 CDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGN 98
          CDC + EV S     AD +    +YLR   A  N
Sbjct: 62 CDCPISEVPSAKQKLADSLFTSHEYLRQTSAEAN 95


>SPBC28E12.03 |rga4||GTPase activating protein
          Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRL 69
          C +C + +     +    + WH DC KC  C+ +L
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKL 58



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 99  CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHR 133
           C+ C + +P+   V       +H +CF C  CN +
Sbjct: 24  CIKCWESVPSTSQVWFGGK-CWHSDCFKCVNCNKK 57


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 78  YKADLMLCKRDYLRLFGATGNCVACNKVIP---AFEMVMRAKSFV 119
           ++   +L  RDY    G + +C+  N ++P   AF  + +A+ F+
Sbjct: 242 FRTLFLLLIRDYSLFHGNSSHCMLANSMLPPSIAFSKMEKAEIFL 286


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 19  YSLSNNVASSTGGARLCAQCGKVI 42
           Y+LS N++ STGG R    C KVI
Sbjct: 524 YTLSTNLSPSTGG-RYSIGCVKVI 546


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,145
Number of Sequences: 5004
Number of extensions: 34835
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 11
length of query: 234
length of database: 2,362,478
effective HSP length: 71
effective length of query: 163
effective length of database: 2,007,194
effective search space: 327172622
effective search space used: 327172622
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)