Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
(234 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 39 0.004
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 38 0.009
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 35 0.065
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 34 0.086
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 34 0.086
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 34 0.11
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 33 0.20
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 33 0.20
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 31 0.61
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 31 0.61
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 31 0.80
06_03_0367 - 19938941-19939324 28 5.7
05_07_0159 + 28084303-28084809 28 5.7
05_06_0028 + 25055750-25056082 28 5.7
04_03_0222 + 12928470-12928779,12931919-12932052,12932352-129325... 28 5.7
08_02_0556 + 18592393-18592580,18592839-18593031,18593110-185934... 28 7.5
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 27 9.9
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 31 GARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGE 71
G R+CA C I + L M+ WH C +C CD + E
Sbjct: 174 GLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 28 STGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKR 87
++ G+R CA C I L M+ WH C +C C+ + E ++ D K
Sbjct: 250 ASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMH--EDQPYHKS 307
Query: 88 DYLRLFGATGNCVACNKVIP 107
Y F C C IP
Sbjct: 308 CYKDFFHP--KCDVCKNFIP 325
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 34.7 bits (76), Expect = 0.065
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQC 130
G T C+AC+K + + + A + VYH CF C C
Sbjct: 7 GTTTKCMACDKTVYLVDK-LTADNRVYHKACFRCHHC 42
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYD 152
G CV CNK + E V + +YH CF C C+ + Y+ + K+ C++
Sbjct: 105 GTREKCVGCNKTVYPIERV-TVNNTMYHKSCFKC--CHGGCTISPSNYIAHEGKLYCKHH 161
Query: 153 Y 153
+
Sbjct: 162 H 162
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 25 VASSTGGAR-LCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLM 83
V+S+ G R C C K + + +H+ C KC C + S +
Sbjct: 99 VSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISP--SNYIAHEGKL 156
Query: 84 LCKRDYLRLFGATGN 98
CK +++L GN
Sbjct: 157 YCKHHHIQLIKEKGN 171
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 27 SSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCK 86
S G C C K + L A R +H+ C +C C L + ++ C+
Sbjct: 4 SFQGTTTKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSF--EGVLYCR 61
Query: 87 RDYLRLFGATGN 98
+ +LF TG+
Sbjct: 62 PHFDQLFKRTGS 73
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 34.3 bits (75), Expect = 0.086
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G C AC+K + ++ + A S YH CF C C + + D + C+ +
Sbjct: 5 GTQDKCNACDKTVHFIDL-LTADSIPYHKSCFRCSHCKGTLSMCS-YSSMDGVLYCKTHF 62
Query: 154 EE 155
E+
Sbjct: 63 EQ 64
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LMLCKRDYLRLF 93
C C K + LL A +H+ C +C C G + Y D ++ CK + +LF
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCSHCK---GTLSMCSYSSMDGVLYCKTHFEQLF 66
Query: 94 GATG 97
TG
Sbjct: 67 KETG 70
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 34.3 bits (75), Expect = 0.086
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 29 TGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCD 66
+ G R CA C I L M WH +C +C C+
Sbjct: 552 SSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACN 589
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 27 SSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LMLC 85
S TG C C K + LL A +H+ C KC C G + Y D ++ C
Sbjct: 2 SFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCK---GTLSMCNYSSMDGVLYC 58
Query: 86 KRDYLRLFGATGN 98
K + +LF TG+
Sbjct: 59 KTHFEQLFKETGS 71
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G C AC+K + ++ + A YH CF C C + + + D + C+ +
Sbjct: 5 GTQDKCKACDKTVHFIDL-LTADGVSYHKTCFKCSHCKGTLSMCN-YSSMDGVLYCKTHF 62
Query: 154 EE 155
E+
Sbjct: 63 EQ 64
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 10 GRCQQDENKYSLSNNVASSTGGAR-LCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCR 68
G+ + ++ + ++S+ G + CA C K + L +H+ C KC C
Sbjct: 80 GKSSEKSDQGRAPSKLSSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCI 139
Query: 69 LGEVGSKLYYKADLMLCKRDYLRLFGATGN 98
L S ++ CK + +LF G+
Sbjct: 140 L--TTSSYAALNGILYCKIHFSQLFKEKGS 167
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 27 SSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LMLC 85
S TG C C K + LL A +H+ C KC C G + Y D ++ C
Sbjct: 2 SFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCK---GILSMCSYSSMDGVLYC 58
Query: 86 KRDYLRLFGATGN 98
K + +LF TG+
Sbjct: 59 KTHFEQLFKETGS 71
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G C AC+K + ++ + A YH CF C C + + D + C+ +
Sbjct: 5 GTQDKCTACDKTVHFIDL-LTADGVPYHKTCFKCSHCKGILSMCS-YSSMDGVLYCKTHF 62
Query: 154 EE 155
E+
Sbjct: 63 EQ 64
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 4 EVEDSFGRCQQDE---NKYSLSNNVASS-----TGGARLCAQCGKVITERFLLKAMERFW 55
E ++ R QD N Y N A S + G R+C C I L + +W
Sbjct: 75 ENDEELARAIQDSLNMNPYQPYNPCAPSQTQARSRGYRVCGGCKHEIGHGHYLSCLGMYW 134
Query: 56 HEDCLKCGCC 65
H C +C C
Sbjct: 135 HPQCFRCSSC 144
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 53 RFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCV 100
R W + C+ GC R+ + K+ AD +LC+ ++L L G+TG +
Sbjct: 475 RGWGKCCV-AGCSGIRVNDA-EKVVLVADKVLCEGEWLSLNGSTGEVI 520
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGD 138
G C C K + + + V+H CF CQ C +G+
Sbjct: 4 GTQQKCKVCTKTVYPMDQ-LSTDGVVFHRSCFKCQHCKSTLSLGN 47
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 26 ASSTGGA-RLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLML 84
A++ GG + C CG+ + L A R +H C +C C L S ++
Sbjct: 3 AAAWGGTTQKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATL--QFSNYSSVEGVLY 60
Query: 85 CKRDYLRLFGATGN 98
CK Y ++ +TG+
Sbjct: 61 CKPHYDQILKSTGS 74
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQC 130
G T C +C + + E + A VYH CF C C
Sbjct: 8 GTTQKCDSCGRTVYPVEE-LAADGRVYHRPCFRCTHC 43
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFAC 127
G CV CNK + E V YH CF C
Sbjct: 107 GTQDKCVVCNKTVYPLEKV-NLNGSSYHKSCFRC 139
>06_03_0367 - 19938941-19939324
Length = 127
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 26 ASSTGGARLCAQCGKVITERFL---LKAMERFWHEDCL 60
A+S GG R CA C + E + L A E +H DC+
Sbjct: 61 AASGGGGRECAVCLGAVREGEMVRRLPACEHVYHADCI 98
>05_07_0159 + 28084303-28084809
Length = 168
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 58 DCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRL 92
DC+ GCC C L + S KA L + +R RL
Sbjct: 43 DCIALGCCPCALVSMLSLALVKAPLAVGRRCVGRL 77
>05_06_0028 + 25055750-25056082
Length = 110
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 24 NVASSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRL 69
NV ++ GG LC C + + + E+ ED +K CR+
Sbjct: 24 NVKANFGGKWLCGLCSEAVGDELSKDRREQDGIEDAIKAHMAFCRM 69
>04_03_0222 +
12928470-12928779,12931919-12932052,12932352-12932548,
12932807-12932999,12933078-12933467,12933544-12933623,
12933757-12933851,12933869-12934077,12934150-12934206,
12934466-12934549
Length = 582
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 2 NPEVEDSFGRCQQDENKYSLSNNVASSTGG 31
+PEVED F QDE SL + S GG
Sbjct: 161 DPEVEDHFEDSTQDEPSNSLVTSTKESKGG 190
>08_02_0556 +
18592393-18592580,18592839-18593031,18593110-18593499,
18593576-18593686,18593789-18593867,18594048-18594109,
18594182-18594238,18594498-18594581
Length = 387
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 2 NPEVEDSFGRCQQDENKYSLSNNVASSTGG 31
+PEVED F QDE SL + S GG
Sbjct: 10 DPEVEDHFEDSTQDEPSDSLVTSTKESKGG 39
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 153 YEERLVFASMAANPSGLA---HIRRQVSGLQSP 182
+ RL FA++A+NP G A H+ R S + SP
Sbjct: 311 FHNRLGFAAVASNPLGAAASGHLLRAASAVASP 343
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.140 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,660,609
Number of Sequences: 37544
Number of extensions: 242994
Number of successful extensions: 701
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 33
length of query: 234
length of database: 14,793,348
effective HSP length: 80
effective length of query: 154
effective length of database: 11,789,828
effective search space: 1815633512
effective search space used: 1815633512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
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