Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
(234 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 167 7e-42
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 113 2e-25
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 112 3e-25
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 107 8e-24
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 97 1e-20
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 5e-13
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 66 3e-11
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 55 4e-08
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 54 1e-07
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 53 2e-07
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 44 1e-04
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 40 0.002
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 39 0.003
SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14) 39 0.003
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 38 0.007
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 34 0.12
SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8) 32 0.47
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 32 0.47
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08) 31 1.1
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5) 29 2.5
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 29 4.4
SB_48571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.8
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.6
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 167 bits (406), Expect = 7e-42
Identities = 68/117 (58%), Positives = 88/117 (75%)
Query: 33 RLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRL 92
RLC C + I+++++L+A+ +WHE CLKC CCD RLG++GS LY KA+L+LCKRDYLRL
Sbjct: 15 RLCRSCNEPISDKYVLQALGSYWHEGCLKCECCDSRLGDIGSSLYSKANLILCKRDYLRL 74
Query: 93 FGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
FG G C CNK I AFE+VMRA++ YH+ECF CQ+C R VG+ F DNK+LC
Sbjct: 75 FGIPGVCSHCNKPIAAFELVMRARNNAYHIECFGCQRCRKRLVVGEAFCFHDNKVLC 131
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 99 CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDY 153
C +CN+ I + + V++A +H C C+ C+ R +G Y N ILC+ DY
Sbjct: 17 CRSCNEPI-SDKYVLQALGSYWHEGCLKCECCDSRLGDIGSSLYSKANLILCKRDY 71
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 113 bits (271), Expect = 2e-25
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 34 LCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLF 93
+CA CG I ERF L A+++ WH DCLKC C+ RL + + K ++LC+ DY R F
Sbjct: 247 VCAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELT-CFSKDGVILCREDYYRRF 305
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
C +C++ I + E+VMRA+ VYH+ CFAC +C G+ F + +I C+ DY
Sbjct: 306 SVK-KCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCKEDY 364
Query: 154 EERL 157
EE L
Sbjct: 365 EELL 368
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 112 bits (269), Expect = 3e-25
Identities = 51/124 (41%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 30 GGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDY 89
G +C C + I +RFL+K ++ WHE CL+C C CR ++ + K + C+ DY
Sbjct: 41 GRVNICTGCNEPIEDRFLMKVVDEAWHESCLQC--CICR-SQLSRSCFSKDRKLYCRTDY 97
Query: 90 LRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
++FG C C K IPA E+VMRA VYHL CF C C H G F L DNK+ C
Sbjct: 98 EKVFGT--KCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYC 155
Query: 150 EYDY 153
+ D+
Sbjct: 156 KADF 159
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 107 bits (257), Expect = 8e-24
Identities = 55/130 (42%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 28 STGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKR 87
ST G R C C I +R+L+K R WH CLKC C LG + Y K + CK
Sbjct: 96 STQGER-CVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREAT-CYTKDGKIYCKA 153
Query: 88 DYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKI 147
DY R FG C C + I A + V RAK+ VYHL CFAC C + G+ F L D +
Sbjct: 154 DYARQFGT--KCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHV 211
Query: 148 LCEYDYEERL 157
LC+ Y E L
Sbjct: 212 LCKLHYLEAL 221
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 96.7 bits (230), Expect = 1e-20
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
CA C I ++FLLK ++ WH C++C C C L E + + + + CK D+ R +G
Sbjct: 5 CAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTE---RCFSREGKLFCKTDFYRRYG 61
Query: 95 ATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDR-FYLCDNKILCEYDY 153
C C++ I +MV RAK V+H++CF C C + GD +Y+ D +C DY
Sbjct: 62 T--KCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDY 119
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 71.7 bits (168), Expect = 5e-13
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 91 RLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 150
+L+G +G C C K+IPA E+VM+ VYHL CF C C+++ GDRF++ + ++ CE
Sbjct: 700 KLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRLFCE 759
Query: 151 YD 152
D
Sbjct: 760 ND 761
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/55 (50%), Positives = 32/55 (58%)
Query: 99 CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
C C K IPA E+VMRA VYHL CF C C H G F L DNK+ C+ D+
Sbjct: 7 CSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADF 61
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 55.2 bits (127), Expect = 4e-08
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 8 SFGRCQQDENKY-SLSNNVAS---STGGARLCAQCGKVITERFLLKAMERFWHEDCLKCG 63
S G+ Q +N SL +++ ST +CA C K I + + A+ + WH + C
Sbjct: 251 SVGKVSQLDNMLGSLQSDMTRQGVSTTKKGMCAACNKPIIGQ-VCTALGKTWHPEHFACV 309
Query: 64 CCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLE 123
C+ LG + + C+RDY F C CN P + + A +H E
Sbjct: 310 ACEAPLGT--QNFFERDGKPYCERDYHDTFAP--RCAYCNG--PILDSCVTALDQTWHPE 363
Query: 124 CFACQQCNHRFCVGDR-FYLCDNKILCEYDY 153
F C +C + F GD F+ D K C DY
Sbjct: 364 HFVCAECGNPF--GDTGFHERDGKPFCREDY 392
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 92 LFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 151
LFG C C+ + VMRA++ +YH++CF C C+ + GD F L ++ + C+
Sbjct: 79 LFGT--KCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFCKA 136
Query: 152 DYEERLVFASMAANPSGLAHIRRQVSGLQSPSGG 185
D+E A + H+R S SGG
Sbjct: 137 DHE----IVEKATATAQATHVRNN-GQRSSQSGG 165
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 35 CAQCGKVITER-FLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLF 93
CA+C ++ F+++A + +H DC +C C +L G + + D + CK D+ +
Sbjct: 84 CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQL-VPGDEFALREDGLFCKADHEIVE 142
Query: 94 GATGNCVA 101
AT A
Sbjct: 143 KATATAQA 150
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 53.2 bits (122), Expect = 2e-07
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 13 QQDENKYSLSNNVASSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEV 72
++DE + L NN S A++C +C +VI + A + H +C C CD L
Sbjct: 218 RRDERR--LCNNCFDSKF-AKVCVKCNQVIKTSSVQHAGSTY-HSECFTCHHCDKPLA-- 271
Query: 73 GSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNH 132
GS + +C+ Y + C AC+ +I + +H ECF C +CN
Sbjct: 272 GSPFTKQEGRNVCQNCYRERYAK--RCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCN- 328
Query: 133 RFCVGDRFYLCDNKILC 149
+ G++F + D + +C
Sbjct: 329 KPLAGEKFRIRDGEKIC 345
Score = 35.5 bits (78), Expect = 0.038
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 53 RFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFEMV 112
R W E LK C C E+ K + ++C R + C ACN E
Sbjct: 135 RHWGEK-LKPRCAGCE--EMNEGFTLKDEKLICHG--CRGINPSKVCAACNGDFAPGEKK 189
Query: 113 MRAKSFVYHLECFACQQCNHRFCVGDR-FYLCDNKILCEYDYEERLVFASMAAN 165
+ +S +H +CF C +C +G + F D + LC ++ + + N
Sbjct: 190 VGYQSKTFHDKCFICDECKQP--IGSKQFIRRDERRLCNNCFDSKFAKVCVKCN 241
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 39 GKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGAT-- 96
GK + R ++KAM+ WH DC +C C+ L + G + + + +++ G
Sbjct: 18 GKFVIGR-VIKAMQANWHPDCFRCEICNDCLADTGF-VKNAGSTYIPEGEHIMYMGDPVH 75
Query: 97 ---GNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
NC C + P + V+ A +H+E F C +C F G R+Y CE Y
Sbjct: 76 PWHYNCFCCGR--PVEDRVVHALGKAWHVEHFVCAKCEKPF-YGHRYYERKGLAYCETHY 132
Query: 154 EE 155
E
Sbjct: 133 NE 134
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LMLCKRDYLRLF 93
CA CG+ I L A+E+ WH C C C C L S Y D C++DY LF
Sbjct: 89 CAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLL----SLEYMGMDGKPYCEKDYQELF 144
Query: 94 GATGNCVACNKVI 106
G T C ACN I
Sbjct: 145 GVT--CAACNGYI 155
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 85 CKRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCD 144
CK DY +G C +C + + + K+F H CFAC C F D+
Sbjct: 7 CKDDYQNQYGK--KCDSCQLYLEGEIISIHGKNF--HEACFACNSCRQPFPPSDKIIFTG 62
Query: 145 NKILCE 150
LC+
Sbjct: 63 TDYLCQ 68
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 99 CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERL 157
C C + I + ++ + +HL CF+C +C+ C+ Y+ D K CE DY+E
Sbjct: 89 CAGCGEAIKGSQALLALEK-QWHLWCFSCTKCH---CLLSLEYMGMDGKPYCEKDYQELF 144
Query: 158 VFASMAAN 165
A N
Sbjct: 145 GVTCAACN 152
>SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 34 LCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLF 93
+C C K IT +++ + H +C C CR G + D +CK D R+
Sbjct: 1 ICNSCFKTITSS-VVRYQNKPHHSECFVC--FHCRTPLAGKTFQMRDDRKVCK-DCNRIH 56
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
A CVAC + I + YH +CF C +C + G F + +C+ Y
Sbjct: 57 YAK-RCVACRQYIEGTVKFVTRDEGTYHSDCFVCSRC-RKPLAGKTFTEHEGSWVCDDCY 114
Query: 154 EER 156
+R
Sbjct: 115 HDR 117
Score = 35.9 bits (79), Expect = 0.029
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 32 ARLCAQCGKVI--TERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDY 89
A+ C C + I T +F+ + E +H DC C CR G +C Y
Sbjct: 58 AKRCVACRQYIEGTVKFVTRD-EGTYHSDCFVCS--RCRKPLAGKTFTEHEGSWVCDDCY 114
Query: 90 LRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCV-GDRFYL-CDNKI 147
+ C C++ + A ++ +YH ECF CQ R + G +F L D +
Sbjct: 115 HDRYAK--RCNMCHQSLEANVEFVKYDEKLYHNECFVCQNPRCRKPLSGAKFALKSDGRR 172
Query: 148 LC 149
+C
Sbjct: 173 MC 174
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 48.0 bits (109), Expect = 7e-06
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 35 CAQCGKVITE-RFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLF 93
C CG++I L+ FWHE+C +C C +G G K D C Y F
Sbjct: 402 CFACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTSG--FVPKDDTFFCPGCYQSKF 459
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
+ C +C + P E + +H CF+C C HR F + D C
Sbjct: 460 --SKRCASCGE--PLLEGGVLYNGETWHKACFSCYFC-HRSLASAAFSVRDGCRYC 510
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 32 ARLCAQCGKVI--TERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDY 89
A C C + I R + +R WH+ C C C L G +Y+ D +LC Y
Sbjct: 336 AHECEACHQKIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYR-DQILCNNCY 394
Query: 90 LRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
+ + C AC ++I + + +H CF C C F D+ C
Sbjct: 395 VANY--QKECFACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTSG-FVPKDDTFFC 451
Query: 150 EYDYEER 156
Y+ +
Sbjct: 452 PGCYQSK 458
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 32 ARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLR 91
++ CA CG+ + E +L E WH+ C C C L + + C Y +
Sbjct: 460 SKRCASCGEPLLEGGVLYNGET-WHKACFSCYFCHRSLASAAFSV--RDGCRYCMECYGK 516
Query: 92 LFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
+ C C K I E +S +H ECF C +C R + F +++LC
Sbjct: 517 FYAK--QCEICLKAIVGGEYYTLEESN-FHKECFMCSRCG-RSLASEGFVREGDELLC 570
Score = 37.1 bits (82), Expect = 0.012
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
C + + T + + AM + WH +C CD + G + + D +C + +
Sbjct: 280 CLKALLIFTGEYTV-AMNKNWHLGHFQCQTCDHSI--TGRQFIVRGDKPVCTDCFKDSY- 335
Query: 95 ATGNCVACN-KVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
C AC+ K+ P + +H +CF C C +F ++ILC Y
Sbjct: 336 -AHECEACHQKIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYRDQILCNNCY 394
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 73 GSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNH 132
G+K +Y A + F + G C+ + V K+ +HL F CQ C+H
Sbjct: 254 GAKPFYSAGAKPFYSAGAKPFYSAGPCLKALLIFTGEYTVAMNKN--WHLGHFQCQTCDH 311
Query: 133 RFCVGDRFYLCDNKILC 149
G +F + +K +C
Sbjct: 312 SI-TGRQFIVRGDKPVC 327
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 54 FWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFEMVM 113
FWHE+C +C C +G G K D C Y F + C +C + P E +
Sbjct: 10 FWHENCFRCANCGEAIGTSG--FVPKDDTFFCPGCYQSKF--SKRCASCGE--PLLEGGV 63
Query: 114 RAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
+H CF+C C HR F + D C
Sbjct: 64 LYNGETWHKACFSCYFC-HRSLASAAFSVRDGCRYC 98
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 32 ARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLR 91
++ CA CG+ + E +L E WH+ C C C L + + C Y +
Sbjct: 48 SKRCASCGEPLLEGGVLYNGET-WHKACFSCYFCHRSLASAAFSV--RDGCRYCMECYGK 104
Query: 92 LFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
+ C C K I E +S +H ECF C +C R + F +++LC
Sbjct: 105 FYAK--QCEICLKAIVGGEYYTLEESN-FHKECFMCSRCG-RSLASEGFVREGDELLC 158
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
CA C ++I +A + WH C CDC LG G + + + C + L+
Sbjct: 143 CAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLG--GMRYVMRDNKPYCCHCFESLYA 200
Query: 95 ATGNCVACNKVI--PAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 152
C +C + I A +M + + ECF+C C + +G F +I C D
Sbjct: 201 EF--CDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCG-KALLGLPFLPKSGEIYCSPD 257
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 30 GGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDY 89
G C +C K + + A+ + WH+ CL C CC+ L + L K + CK Y
Sbjct: 5 GVVEKCPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLD--STNLADKDGEIYCKGCY 62
Query: 90 LRLFGATG 97
+ FG G
Sbjct: 63 GKNFGPKG 70
>SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14)
Length = 82
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
CA CG+ + A+ + +H C +C C+ RL + Y + + CK+DYL F
Sbjct: 11 CATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERL---STDFYARGSELYCKKDYLSKFN 67
Query: 95 ATGNCVACN 103
+ + A N
Sbjct: 68 SVCHICAHN 76
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 35 CAQCGKVITERFLLKAME--RFWHEDCLKCGCCDCRLG--EVGSKLYYKADLMLCKRDYL 90
CA C + I + + E R+WH+DC C C R G E S L L+ C+ ++
Sbjct: 2031 CASCSQPIRKSMAVYVSELKRYWHDDCFSCVVCHVRFGTAEQRSPLKITDSLLHCENCFI 2090
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 31 GARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLM-LCKRDY 89
G CA CGK++ + LK E H C C+ G ++ + +L L ++Y
Sbjct: 399 GRYACAYCGKIMAKPSALKEHEAL-HSGPRPHRCRSCKRGFTTAEKLEEHELFHLGLKEY 457
Query: 90 LRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRF 134
C C+K P + K +V+ + F C+ C+ F
Sbjct: 458 --------KCTLCDKGFPNLSALKGHKLYVHGEKRFKCEVCDKSF 494
>SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8)
Length = 154
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 3 PEVEDSFGRCQQDENKYSLSNNVASSTGGARL--CAQCGKVITERFLLKAMERFWHEDCL 60
P V + + ++ SL V S+ GGA++ CA CG + + K + H C+
Sbjct: 23 PRVSEPSNKSNIQRDRRSLQEPVKSAFGGAKVDKCAVCGTTVYQMEKCKFDDCILHRQCM 82
Query: 61 K 61
K
Sbjct: 83 K 83
>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 31.9 bits (69), Expect = 0.47
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
C QC + + + LK+ R H+D K CD E + DL+ KR +
Sbjct: 607 CDQCNLLFSWQCSLKSHIREVHKDVEKRSKCD----ECQKCFHRHRDLLTHKRTVHKK-E 661
Query: 95 ATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRF 134
C C K+ + R V+ + F C++C +F
Sbjct: 662 KPYKCDVCKKIFGLSSSLSRHIRTVHQDKAFKCERCEKKF 701
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
CA C ++I +A +R WH+ C CD LG G + C Y + +
Sbjct: 374 CAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLG--GQLYVARGGQPHCLECYDKYYA 431
Query: 95 ATGNCVACNKVIPA 108
+C++C K I A
Sbjct: 432 K--HCMSCKKNIAA 443
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 85 CKRDYLRLFGATGNCVACNKVIPAFEMVMRA----KSFVYHLECFACQQCNHRFCVGDRF 140
C++ L L T NC C+K + E+ + A + +H CF C CN+ V +
Sbjct: 296 CRKVALVLL-ITMNCFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNN-LLVDLIY 353
Query: 141 YLCDNKILCEYDYEER 156
+ D I C Y E+
Sbjct: 354 FYKDGVIYCGRHYAEQ 369
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 99 CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILC 149
C+ C + + E ++ A+ ++H CF C +CN G + +++ C
Sbjct: 611 CLICGERVYLMERLV-AERRLFHRACFRCSRCNSSLRAGTYTFFPESESFC 660
>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
Length = 197
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRL 69
C +C K + KA + WH+ CL C C+ RL
Sbjct: 5 CPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRL 39
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 96 TGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCN 131
+ C +C K + E V ++ V+H CF C CN
Sbjct: 242 SNRCDSCGKSVDILERVA-VENHVFHKACFVCAICN 276
>SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5)
Length = 106
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 98 NCVACNKVIPAF-EMVMRAKSFVYHLECFACQQCNHRFCVGDRF 140
NC+ NK + A + V RAK C AC++C+ CVGD F
Sbjct: 61 NCLNKNKRLKAGNKAVKRAKE-----TCNACRKCDVHLCVGDCF 99
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 8 SFGRCQQDENKYSLSNNVASSTGGAR-----LCAQCGKVITERFLLKAMERFWHEDC--L 60
S G QD+ K S ++ + + LC CGK+ T ++ LK R H L
Sbjct: 512 SNGTLTQDKTKPGCSEDMINDLNSKKVNKGYLCELCGKLYTRKYGLKIHMRI-HTGYKPL 570
Query: 61 KCGCCDCRLGE 71
KC C R G+
Sbjct: 571 KCKYCQKRFGD 581
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 99 CVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHR 133
C C K A E V+ A F +H CF C +C+ +
Sbjct: 218 CPRCEKRAYAAEQVLGA-GFNWHKSCFNCYKCHKK 251
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 28 STGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCR 68
S G C +C K+ + + WH+ C C CR
Sbjct: 290 SEGAPMRCGRCDKMCYHAEGISMAGKRWHKSCFACAEVRCR 330
>SB_48571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 83 MLCKRDYLRLFGATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGD 138
+L + L L +C CN +I E + ++ F C+QC + CV D
Sbjct: 151 VLTNKQTLNLIANNAHCEHCNALINRKEAAVVGETRGKVSITFKCKQCGGQTCVSD 206
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 31 GARLCAQCGKVITERFLLKAMERFWHED-CLKCGCCDCRLGEVGS 74
G C +CGK E+ LL R +ED C CD R + G+
Sbjct: 595 GGVACERCGKEFKEQRLLDLHMRLHNEDRPFPCKICDKRFTQRGN 639
>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 615
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
C +CG T + LKA H C C E +++Y K + + K + +
Sbjct: 497 CPECGSAFTRQDNLKA-HMMLHSRQGVVSCDKCHK-EFINQIYLKRHMHIHKEAKKKPY- 553
Query: 95 ATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRF 134
C C K E + R E F C+QC+ +F
Sbjct: 554 ---ECQWCPKTYENLEGLRRHIKQHVGDEKFVCEQCDKKF 590
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.326 0.140 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,567,007
Number of Sequences: 59808
Number of extensions: 289210
Number of successful extensions: 825
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 50
length of query: 234
length of database: 16,821,457
effective HSP length: 80
effective length of query: 154
effective length of database: 12,036,817
effective search space: 1853669818
effective search space used: 1853669818
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)
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