GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
         (234 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.           31   0.039
AY193730-1|AAO62003.1|  441|Anopheles gambiae cytochrome P450 CY...    26   0.83 
AY313948-1|AAP76391.1|  424|Anopheles gambiae cytochrome P450 CY...    25   1.9  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   7.7  

>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 30.7 bits (66), Expect = 0.039
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 69  LGEVGSKLYYKADLMLCKRDYLRLFGATGNCVAC 102
           +G   S   Y+ DL   K DY +  G +GNC+AC
Sbjct: 50  IGRTLSISEYEDDLGRGKHDYSKTTGNSGNCIAC 83


>AY193730-1|AAO62003.1|  441|Anopheles gambiae cytochrome P450
           CYPm3r10 protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 0.83
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 1   MNPEVEDSFGRCQQDENKYSLSNNV 25
           ++PEV D F    +D  KY + NNV
Sbjct: 180 LDPEVSDFFMNAVRDTIKYRVENNV 204


>AY313948-1|AAP76391.1|  424|Anopheles gambiae cytochrome P450
           CYP6M4 protein.
          Length = 424

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 3   PEVEDSFGRCQQDENKYSLSNNV 25
           PEV D F    +D  KY + NNV
Sbjct: 182 PEVSDFFMNAVRDTIKYRVENNV 204


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 56  HEDCLKCGCCDCRLGEVGSKLYYKADLMLC 85
           H  C+ CG C+CR G  G     +A    C
Sbjct: 608 HGRCV-CGQCECREGWTGPACDCRASNETC 636


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.326    0.140    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,229
Number of Sequences: 2123
Number of extensions: 9348
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 516,269
effective HSP length: 62
effective length of query: 172
effective length of database: 384,643
effective search space: 66158596
effective search space used: 66158596
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 47 (23.0 bits)