GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 119 VYHLECFACQQCNHRFCVGDRFYLCD 144
           VYHL+       NH   +G   +LC+
Sbjct: 273 VYHLDNHHVHHANHHAILGHSGFLCE 298


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 21  LSNNVASSTGGARLCAQCGKVITERFLLKAME 52
           LS++ AS  GG  +   C KV  E   ++  E
Sbjct: 228 LSHSNASVAGGMEMILLCEKVAKEDIQVRFFE 259


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 21  LSNNVASSTGGARLCAQCGKVITERFLLKAME 52
           LS++ AS  GG  +   C KV  E   ++  E
Sbjct: 228 LSHSNASVAGGMEMILLCEKVAKEDIQVRFFE 259


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 61  KCGCCDCRLGEVGSKLYYKADLMLCK 86
           KC  C  R  E G+    K DL+  +
Sbjct: 273 KCSLCQRRFEEQGNYSCLKVDLIFTR 298


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,185
Number of Sequences: 429
Number of extensions: 2470
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)