Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001204-TA|BGIBMGA001204-PA|IPR001781|LIM, zinc-binding
(234 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 40 0.002
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 35 0.041
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 35 0.054
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 34 0.095
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 33 0.13
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 33 0.17
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 33 0.22
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 31 0.51
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 29 2.0
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge... 29 3.6
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 4.7
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 4.7
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 4.7
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G T C AC+K + ++ M + YH CF C CN + + + D + C+ +
Sbjct: 6 GTTDKCKACDKTVYVMDL-MTLEGMPYHKSCFRCSHCNGTLVICN-YSSMDGVLYCKTHF 63
Query: 154 EE 155
E+
Sbjct: 64 EQ 65
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 25 VASSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LM 83
+A+ TG C C K + L+ +H+ C +C C+ G + Y D ++
Sbjct: 1 MAAFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCN---GTLVICNYSSMDGVL 57
Query: 84 LCKRDYLRLFGATGN 98
CK + +LF +GN
Sbjct: 58 YCKTHFEQLFKESGN 72
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G C AC K + A E+ + A YH CF C C R + + + + C+ +
Sbjct: 5 GTQQKCKACEKTVYAVEL-LSADGVGYHKSCFKCTHCKSRLQLSS-YSSMEGVLYCKPHF 62
Query: 154 EE 155
E+
Sbjct: 63 EQ 64
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 27 SSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCK 86
S TG + C C K + LL A +H+ C KC C RL ++ S + ++ CK
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL-QLSSYSSMEG-VLYCK 59
Query: 87 RDYLRLFGATGN 98
+ +LF +G+
Sbjct: 60 PHFEQLFKESGS 71
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 29 TGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRD 88
+G CA C K + + + +H+ C KC C + S ++ CK
Sbjct: 102 SGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISP--SNYAALEGILYCKHH 159
Query: 89 YLRLFGATGN 98
+ +LF G+
Sbjct: 160 FAQLFKEKGS 169
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQC 130
G T C+AC+K + + + A + VYH CF C C
Sbjct: 5 GTTQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHC 40
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 33.9 bits (74), Expect = 0.095
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G C AC K + E+ + A YH CF C C R + + + + + C +
Sbjct: 5 GTQQKCRACEKTVYPVEL-LSADGISYHKACFKCSHCKSRLQLSN-YSSMEGVVYCRPHF 62
Query: 154 EE 155
E+
Sbjct: 63 EQ 64
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 27 SSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCK 86
S TG + C C K + LL A +H+ C KC C RL S ++ C+
Sbjct: 2 SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQL--SNYSSMEGVVYCR 59
Query: 87 RDYLRLFGATGN 98
+ +LF +G+
Sbjct: 60 PHFEQLFKESGS 71
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFG 94
CA C K + + + +H+ C KC C + S ++ CK + +LF
Sbjct: 109 CATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISP--SNYAALEGILYCKHHFAQLFK 166
Query: 95 ATGN 98
G+
Sbjct: 167 EKGS 170
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G C AC+K + ++ + + YH CF C C + + + D + C+ +
Sbjct: 5 GTLDKCKACDKTVYVMDL-LTLEGNTYHKSCFRCTHCKGTLVISN-YSSMDGVLYCKPHF 62
Query: 154 EE 155
E+
Sbjct: 63 EQ 64
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 27 SSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCK 86
S TG C C K + LL +H+ C +C C L V S ++ CK
Sbjct: 2 SFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTL--VISNYSSMDGVLYCK 59
Query: 87 RDYLRLFGATGN 98
+ +LF +GN
Sbjct: 60 PHFEQLFKESGN 71
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 108 AFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYL 142
A + +A+ V H++C C +R+C+G R +L
Sbjct: 444 ASKFCFQARKIVKHIDCCKVPNCKYRYCLGTRMWL 478
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 33 RLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGE 71
R+CA C I L + WH +C +C C + E
Sbjct: 170 RICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISE 208
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 94 GATGNCVACNKVIPAFEMVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 153
G C C+K + +M + + YH CF C C + + + D + C+ +
Sbjct: 5 GTLDKCNVCDKTVYVVDM-LSIEGMPYHKSCFRCTHCKGTLQMSN-YSSMDGVLYCKTHF 62
Query: 154 EE 155
E+
Sbjct: 63 EQ 64
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 27 SSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKAD-LMLC 85
S TG C C K + +L +H+ C +C C G + Y D ++ C
Sbjct: 2 SFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCK---GTLQMSNYSSMDGVLYC 58
Query: 86 KRDYLRLFGATGN 98
K + +LF +GN
Sbjct: 59 KTHFEQLFKESGN 71
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 35 CAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGEVGSKLYYKADLML-CKRDYLRLF 93
CA C K + ++ +H+ C +C C L Y D +L C+ + +LF
Sbjct: 104 CAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTH---SSYASLDSVLYCRHHFNQLF 160
Query: 94 GATGN 98
GN
Sbjct: 161 MEKGN 165
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 33 RLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCRLGE 71
R+C C I L M F+H +C +C C + E
Sbjct: 160 RICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITE 198
>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
(glycogenin)-related similar to glycogenin
glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
Oryctolagus cuniculus [GI:165513]; contains Pfam profile
PF01501: Glycosyl transferase family 8
Length = 593
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 136 VGDRFYLCDNKILCEYDYEERLVFASMAAN 165
+G + +LC C YD +E+LV+AS AA+
Sbjct: 503 LGWKPWLCYRDYDCNYDVDEQLVYASDAAH 532
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 22 SNNVASSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCR 68
SNN + S + + + +A+ R C +C CC CR
Sbjct: 125 SNNASGSCSSVNTKGESTTIYCKNLACRAVLRQEDSFCRRCSCCICR 171
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 22 SNNVASSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCR 68
SNN + S + + + +A+ R C +C CC CR
Sbjct: 125 SNNASGSCSSVNTKGESTTIYCKNLACRAVLRQEDSFCRRCSCCICR 171
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 22 SNNVASSTGGARLCAQCGKVITERFLLKAMERFWHEDCLKCGCCDCR 68
SNN + S + + + +A+ R C +C CC CR
Sbjct: 108 SNNASGSCSSVNTKGESTTIYCKNLACRAVLRQEDSFCRRCSCCICR 154
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.326 0.140 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,314,084
Number of Sequences: 28952
Number of extensions: 197993
Number of successful extensions: 650
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 24
length of query: 234
length of database: 12,070,560
effective HSP length: 79
effective length of query: 155
effective length of database: 9,783,352
effective search space: 1516419560
effective search space used: 1516419560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
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