GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001203-TA|BGIBMGA001203-PA|undefined
         (141 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    29   0.016
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.26 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       20   7.3  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    20   7.3  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    20   7.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 0.016
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 55  RNLVAGKLRVIMD-GCINNNVAVETTGVWSSEAKKFIAAIGHRLR 98
           RN++ G L +++  GC+     ++ TGVW    +  ++ +G +LR
Sbjct: 739 RNIIVGTLMMVLGTGCVR----IKITGVWLKFLRVILSVVGVKLR 779


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 50   IPKGARNLVAGKLRVIMDGCINNNVAVETTGVWSSEAKKFIAAIGHRLRGQGHDPRSGS 108
            I KGA      K+  + DG I + VA+++    SS + +     G  L+G    P SGS
Sbjct: 1064 ISKGAYRHHLSKMHFVKDGVIPDPVALKSAQQGSSSSSE-----GVPLKGTAVPPPSGS 1117


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
          protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 4  DSQIQPSILPRVPCAVTADAHSQTQS 29
          D +  PS+ P  PC  TA+  S+ Q+
Sbjct: 53 DLEPLPSLFPFSPCNNTANYKSEAQN 78


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 13 PRVPCAVTADAHSQTQSVIHTLDDLASYKNKIPVLKHI 50
          PR    V     + T  ++  + DL  +++  PVL  I
Sbjct: 44 PREQPIVAMFEVNNTPEILQLMSDLKQHQSDDPVLSQI 81


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 17  CAVTADAHSQTQSVIHTL 34
           CA T +  + T S++H L
Sbjct: 310 CASTCEQANDTPSILHEL 327


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 17  CAVTADAHSQTQSVIHTL 34
           CA T +  + T S++H L
Sbjct: 310 CASTCEQANDTPSILHEL 327


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,538
Number of Sequences: 317
Number of extensions: 1076
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 141
length of database: 114,650
effective HSP length: 51
effective length of query: 90
effective length of database: 98,483
effective search space:  8863470
effective search space used:  8863470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)