GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001203-TA|BGIBMGA001203-PA|undefined
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    26   2.5  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   5.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   7.7  

>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 26  QTQSVIHTLDDLASYKNKIPVLKHIPKGARNLVAGKL 62
           + QSVI T+ D   Y   +P+ K I +    L+ G++
Sbjct: 295 EVQSVIRTVSDKILYDKAVPLEKRINRANALLMIGQV 331


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 3   KDSQIQPSILPRVPCAVTADAHSQTQSVIHTLD 35
           K S++ P   PR+     + + S +  + HTLD
Sbjct: 322 KSSEVDPGSPPRIKSRSYSLSRSSSMKLFHTLD 354


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 4   DSQIQPSILPRVPCAVTADAHSQTQSVIHTLDDLASYKNKIPVLKHIPKGARNLVAGKLR 63
           D  ++ ++   + C VTAD+  +    I  +D      N I     +P+G  +L   +LR
Sbjct: 241 DPSVRGNMEEDLHCLVTADSEDKINHAIKLID------NVIQTAASVPEGQNDLKRNQLR 294


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,268
Number of Sequences: 5004
Number of extensions: 21314
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 2,362,478
effective HSP length: 66
effective length of query: 75
effective length of database: 2,032,214
effective search space: 152416050
effective search space used: 152416050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)