Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001203-TA|BGIBMGA001203-PA|undefined
(141 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 1.4
06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910 29 1.4
06_01_0020 + 212055-213440 27 4.3
02_05_1320 - 35693575-35694846 27 4.3
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 27 4.3
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 27 5.7
01_03_0053 + 12050631-12051620 27 5.7
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 27 7.5
03_03_0110 - 14523712-14525183,14525482-14525749 27 7.5
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 27 7.5
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 46 VLKHIPKGARNLVAGKLRVIMDGCINNNVAVETTG 80
V+KH+ + A + K +I++GCI +NV +E TG
Sbjct: 444 VVKHVLQTAAASL--KKELILEGCIGDNVPLEVTG 476
>06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910
Length = 421
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 10 SILPRVPCAVTADAHSQTQSVIHTLDDLASYKNKIPVLKHIPKGARNLVAGKLRVIMDGC 69
S +P + +D H + + +HT +S+ ++I +P+G +NL K+ I+D
Sbjct: 97 SCIPLIMALSDSDNHRRLITDLHT--GCSSHWHRIKDGVRVPRGIKNLKRLKVLEIVDIA 154
Query: 70 INNNVAVETTG 80
+ ++ A++ G
Sbjct: 155 VTDSKAIQELG 165
>06_01_0020 + 212055-213440
Length = 461
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 13 PRVPCAVTADAHSQTQSVIHTLDDLASYKNKIPVLKHIP 51
P C+V+ D Q ++H + D + + +P H+P
Sbjct: 87 PEGGCSVSIDCDGQGVQIVHAVADAVTVADLLPPDAHVP 125
>02_05_1320 - 35693575-35694846
Length = 423
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 25 SQTQSVIHTLDDLASYKNKIPVLKHIPKGARNL 57
+QTQS T DLA+ KN I H P+ +L
Sbjct: 32 TQTQSQTQTPADLATLKNSIRSAAHTPEALADL 64
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 53 GARNLVAGKLRVIMDGCINNNVAVETTGV--WSSEAKKFIAAIGHRLRGQG 101
G N++A +++ + + N V V S EA++F+ GHRLR G
Sbjct: 526 GGTNIIATAAQLVPNVVVYENETVVGGEVIELSGEAREFLRRRGHRLRSTG 576
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 19 VTADAHSQTQSVIHTLDDLASYKNKIPVLKHIPKGARNLVAGKLRVIMDG 68
+TA+ + V H +DD I V + I + RNLV VI DG
Sbjct: 173 ITAEMAEKWGLVNHIVDDTQVLSKAIEVCEAIARNNRNLVVLYKSVINDG 222
>01_03_0053 + 12050631-12051620
Length = 329
Score = 27.1 bits (57), Expect = 5.7
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 19 VTADAHSQTQSVIHTLDDLASYKN-KIPVLKHIPKGARNLVAGKLRVIMDGCINNNVAVE 77
+TA+ V+HT + + +I + +P G + G + V+ ++ V+
Sbjct: 17 LTAEEFYARHGVLHTSSTFVNPRGLRIFTQRWVPAGGDAPLLGAIAVVHGFTGESSWTVQ 76
Query: 78 TTGVWSSEAKKFIAAIGHRLRG-----QGHDP 104
T V ++A +AA+ H+ G QGH P
Sbjct: 77 LTAVHFAKAGFAVAAVDHQGHGFSEGLQGHIP 108
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 10 SILPRVPCAVTADAHSQTQSVIHTLDDLASYKNK 43
S L +P ++ HSQT L L SY+NK
Sbjct: 865 SCLSPIPRVQSSSTHSQTSVFSGGLSSLGSYRNK 898
>03_03_0110 - 14523712-14525183,14525482-14525749
Length = 579
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 47 LKHIPKGARNLVAGKLRVIMDGCINNNVAVETTGVWSSEAKKFIA 91
LK + N AGK+ +++ G + + VW+SEA+KF A
Sbjct: 500 LKRVIDTVSNAEAGKVALVIMGSVAYGCPL--WDVWASEAEKFTA 542
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 83 SSEAKKFIAAIGHRLRGQGHDPRSGSYLVQRLSIAIQRGNAASVMGTF 130
SS + IAA+GH L GQ R +Q LSI+ G ++ +F
Sbjct: 236 SSSMQNGIAAVGHGLGGQSDSSR---VPLQSLSISSSSGQSSETRQSF 280
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,181
Number of Sequences: 37544
Number of extensions: 157213
Number of successful extensions: 361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 10
length of query: 141
length of database: 14,793,348
effective HSP length: 75
effective length of query: 66
effective length of database: 11,977,548
effective search space: 790518168
effective search space used: 790518168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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