GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001203-TA|BGIBMGA001203-PA|undefined
         (141 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    29   1.5  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_31044| Best HMM Match : Cys_Met_Meta_PP (HMM E-Value=4.7e-05)       28   2.5  
SB_42144| Best HMM Match : v110 (HMM E-Value=5.2)                      28   3.4  
SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)                       28   3.4  
SB_23770| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 82  WSSEAKKFIAAIGHRLRGQGHDPRSGSYLVQRLSIAIQRGNAASVMGTFGPGA 134
           ++ E   F  +IG      G D  + ++LV  L+I ++  N A +  TFG  A
Sbjct: 89  FNGETNTFYVSIGGDGAPFGKDDTATAFLVSFLNIDVRLDNCADLSATFGVSA 141


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 19  VTADAHSQTQSVIHTLDDLASY--KNKIPVLKHIPKGARNLVAGKLRVIMDGCINNNVAV 76
           +T+  H     ++H +DD  SY    K   +  I   A N V+G + V      + +V  
Sbjct: 384 ITSSEHEDVSGLVHNMDDPISYGADGKFGDMDRISDTADNKVSGSMIVEAHRLNDGSVHT 443

Query: 77  ETTGVWSSE 85
            TT   +SE
Sbjct: 444 STTITPASE 452


>SB_31044| Best HMM Match : Cys_Met_Meta_PP (HMM E-Value=4.7e-05)
          Length = 157

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 31  IHTLDDLASYKNKIPVLKHIPKGARNLVAGKLRVIMDGCINNNVAVETTGVWSS-EAKKF 89
           IH   D+ +YKN+ P +       + + AG+ +    G +N+ +   ++ V+ S EAKK 
Sbjct: 26  IHASLDIQTYKNRNPDMADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKH 85

Query: 90  IAAIGHRLRGQGHDPRSGSYLVQRLSIAI--QRGNAASVMGTFGPGAIQSGL 139
             A  +R  G+    R G+     L  A+    G A  V+   G  A+ + +
Sbjct: 86  --ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSI 135


>SB_42144| Best HMM Match : v110 (HMM E-Value=5.2)
          Length = 226

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 14  RVPCAVTADAHSQTQSVIHTLDDLASYKNKIPV 46
           RV    T+ A + T  + HT+  L+SYK  +P+
Sbjct: 125 RVDFEDTSIADASTVKICHTIVGLSSYKKSVPI 157


>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
          Length = 991

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 13  PRVPCAVTADAHSQTQSVIHTLDDLASYKNKIP 45
           PR+P  VT+D +   QSV+ +  +LA     +P
Sbjct: 662 PRLPPKVTSDTYPPLQSVVVSSKNLADVSTAVP 694


>SB_23770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 38  ASYKNKIPVLKHIPKGARNLVAGKLRVIMDGCINNN-----VAVETTGVWSSEAKKFIAA 92
           A Y + + VL+ +P+ + +L+   +  I    +NNN     V  +T  V   + +  +AA
Sbjct: 55  AKYVDDLTVLEVLPRNSPSLLNFIVDDINQYAVNNNMKLNPVKCKTMDVDFLKYRSCVAA 114

Query: 93  IGHRLRGQG 101
            G+R+ G G
Sbjct: 115 CGYRVHGGG 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,469,841
Number of Sequences: 59808
Number of extensions: 163107
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 6
length of query: 141
length of database: 16,821,457
effective HSP length: 75
effective length of query: 66
effective length of database: 12,335,857
effective search space: 814166562
effective search space used: 814166562
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)