GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001203-TA|BGIBMGA001203-PA|undefined
         (141 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    27   5.0  
AL132948-44|CAD31830.2|  410|Caenorhabditis elegans Hypothetical...    27   6.6  

>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 83  SSEAKKFIAAIGHRLRGQGHDPRSGSYLVQRLSIAIQRGNAASVMGT 129
           +SE K  +A   H +     D   G+Y + RLSIA    + +S + T
Sbjct: 2   NSEPKPGLAMSSHFMGTDNQDQYKGTYAMNRLSIANLLNSPSSTLPT 48


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 83  SSEAKKFIAAIGHRLRGQGHDPRSGSYLVQRLSIAIQRGNAASVMGT 129
           +SE K  +A   H +     D   G+Y + RLSIA    + +S + T
Sbjct: 2   NSEPKPGLAMSSHFMGTDNQDQYKGTYAMNRLSIANLLNSPSSTLPT 48


>AL132948-44|CAD31830.2|  410|Caenorhabditis elegans Hypothetical
           protein Y39B6A.38 protein.
          Length = 410

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 6   QIQPSILPRV----PCAVTADAHSQTQSVIHTLDDLASYKNKI 44
           +I PS LPRV        T D+ +QT  ++++ +D+ S+ +KI
Sbjct: 297 RITPSPLPRVIEEEKRITTTDSSTQTTELLYSEEDVKSFFSKI 339


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,721
Number of Sequences: 27539
Number of extensions: 114794
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 12,573,161
effective HSP length: 75
effective length of query: 66
effective length of database: 10,507,736
effective search space: 693510576
effective search space used: 693510576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)