GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001203-TA|BGIBMGA001203-PA|undefined
         (141 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25500.1 68418.m03034 expressed protein ; expression supporte...    29   1.6  
At2g15860.1 68415.m01818 expressed protein  and genefinder             28   2.7  
At1g01770.1 68414.m00096 expressed protein                             28   2.7  
At4g33690.1 68417.m04785 expressed protein                             27   6.3  
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    26   8.4  
At1g50040.1 68414.m05615 expressed protein                             26   8.4  

>At5g25500.1 68418.m03034 expressed protein ; expression supported
           by MPSS
          Length = 420

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 40  YKNKIPVLKHIPKGAR--NLVAGKLRVIMDGCINNNVAVETTGVWSSEAKKFIA--AIGH 95
           Y+ K+PVLK + +  R  +LV GKL  I    + ++   +    + S A+ FI   +I  
Sbjct: 50  YETKLPVLKKLNRALRDVDLVDGKLEDINGVIVYDDGITKKMQAFKSLARIFIGSPSIQQ 109

Query: 96  RLRGQG 101
           +LR +G
Sbjct: 110 KLREEG 115


>At2g15860.1 68415.m01818 expressed protein  and genefinder
          Length = 512

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 101 GHDPRSGSYLVQRLSIAIQRGNAASVMGTFGPGAIQSG 138
           G+  + G+ LVQ+L  ++Q+G++    G+  P  +++G
Sbjct: 156 GNALKGGTSLVQKLENSVQQGSSPREAGSGAPSLLETG 193


>At1g01770.1 68414.m00096 expressed protein
          Length = 632

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 99  GQGHDPRSGSYLVQRLSIAIQRGNA-ASVMGTFGPGAIQSGLFD 141
           G G+DPR   ++   L +A++RG    + MG   P   Q  + +
Sbjct: 78  GLGYDPRVSEWMQLLLPLAVERGTCIITNMGAIDPSGAQKKVLE 121


>At4g33690.1 68417.m04785 expressed protein 
          Length = 281

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 35  DDLASYKNKIPVLKHIPKGARNLVAGKLRVIMDGCINNNVAVETTGVWSSEAKKFIAAIG 94
           D + +Y  K P ++H P  +R L A  L     G    N AVET  +WS  +K+     G
Sbjct: 27  DGVRAYLEK-PNVRHRPN-SRFLTATVL-----GVQQANKAVETNEMWSLRSKEI--EFG 77

Query: 95  HRLRGQGHDPRS 106
            RL+ +  D  S
Sbjct: 78  ERLKRKSRDESS 89


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 35  DDLASYKNKIPVLKHIPKGARNLVAGKLRVIMDGC 69
           DD  +    +P L H+   A  L    L  I+DGC
Sbjct: 496 DDALAIAESMPKLHHLQLMANRLTNTGLNAILDGC 530


>At1g50040.1 68414.m05615 expressed protein
          Length = 460

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 70  INNNVAVETTGVWSSEAKKFIAAIGHRLRGQGHDPRSGSYLVQRLSIAIQRGNAASVMGT 129
           I+ + +  TT  WSS    F  +    +R    D  SGS    R S++  + N   VM T
Sbjct: 340 IDGSTSTTTTASWSSSEGSFDLSSWSSIRSSRTDSGSGSDF--RFSLSQAQQNLGFVMST 397


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,376
Number of Sequences: 28952
Number of extensions: 117146
Number of successful extensions: 263
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 7
length of query: 141
length of database: 12,070,560
effective HSP length: 74
effective length of query: 67
effective length of database: 9,928,112
effective search space: 665183504
effective search space used: 665183504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)