GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001202-TA|BGIBMGA001202-PA|IPR001781|LIM, zinc-binding
         (517 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.96 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   6.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   6.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 0.96
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 95  GGVRTNGACLEPRS--IAKAPPGEGCPRCGG 123
           G    NG CL+       K PPG   PRC G
Sbjct: 267 GACHNNGTCLDKVGGFECKCPPGFVGPRCEG 297


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 410 GHAPTLVSTDSEPT--VTYTEQLPFTGQK 436
           GH  TL++TD EP   V     + F+G++
Sbjct: 364 GHDLTLIATDGEPVHPVRVNTIISFSGER 392


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 410 GHAPTLVSTDSEPT--VTYTEQLPFTGQK 436
           GH  TL++TD EP   V     + F+G++
Sbjct: 364 GHDLTLIATDGEPVHPVRVNTIISFSGER 392


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 234 IKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCR 270
           ++ P G    +     + + Q++   RE+HR  + CR
Sbjct: 76  MERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCR 112


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 234 IKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCR 270
           ++ P G    +     + + Q++   RE+HR  + CR
Sbjct: 96  MERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCR 132


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,435
Number of Sequences: 317
Number of extensions: 5612
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 517
length of database: 114,650
effective HSP length: 60
effective length of query: 457
effective length of database: 95,630
effective search space: 43702910
effective search space used: 43702910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)