Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001202-TA|BGIBMGA001202-PA|IPR001781|LIM, zinc-binding
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 52 3e-07
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 47 7e-06
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 42 3e-04
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 41 4e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 32 0.17
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.29
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 29 1.2
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 29 2.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 2.7
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 3.6
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 4.8
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 8.3
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 51.6 bits (118), Expect = 3e-07
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 118 CPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLD--STNCCEGSDKDIYCKVC 170
C +C V + Q+ G+ WH +CFKC +C K+LD S + + K I+CK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 11 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 62
C KC +SV + + GG WH CFKC C K LD ++ + + +++CK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
Score = 43.2 bits (97), Expect = 9e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 226 TTVIDTASIKAPPGKGC--PRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACD 283
T +D S++ P + C +C V + QV G+ WH CFKC +C + LD
Sbjct: 6 TLHLDRLSLETPSERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDF 65
Query: 284 GPDG--EVYCKTC 294
D +++CK C
Sbjct: 66 SQDDQKQIFCKLC 78
Score = 39.9 bits (89), Expect = 8e-04
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 333 DTTSIKAPKGQGC--PRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPD- 389
D S++ P + C +C V + Q G WH CF C C++ LD D
Sbjct: 10 DRLSLETPSERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDD 69
Query: 390 -KEIHCRAC 397
K+I C+ C
Sbjct: 70 QKQIFCKLC 78
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 443 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLD--STNLNDGPNGEIYCRGC 495
C +C V + Q+ WH CF C +C++ LD S + + +I+C+ C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 46.8 bits (106), Expect = 7e-06
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 240 KGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYGKKW 299
K C CGG + A + A G++ H +CFKC C++ L+ + +G+ YC Y +++
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEH-VGFYYREGKFYCHLDYHEQF 314
Query: 300 GP 301
P
Sbjct: 315 SP 316
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 11 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 67
C CG S+ A A G K H CFKC C + L+ EG+ YC + + +F
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQF 314
Score = 37.9 bits (84), Expect = 0.003
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 116 EGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLD 153
+ C CGG + A + A G+ H +CFKC C + L+
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLE 293
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 64
KC KC K + + + G ++H C+ CG C LL E C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
Score = 35.1 bits (77), Expect = 0.024
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 441 QGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 500
+ C CG + A + + H +CF C C ++L+ G+ YC Y F
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFY-YREGKFYCHLDYHEQF 314
Query: 501 GPK 503
P+
Sbjct: 315 SPR 317
Score = 34.3 bits (75), Expect = 0.041
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 343 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 402
+ C CGG + A A G H +CF C C + L+ + + + +C Y + F
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEH-VGFYYREGKFYCHLDYHEQF 314
Query: 403 GPK 405
P+
Sbjct: 315 SPR 317
Score = 30.3 bits (65), Expect = 0.67
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 243 PRCGGVVFAAE-QVLAKGREW-HRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYGKKW 299
PRC E Q + +W H C C+ + I C D +C+TCY K+
Sbjct: 316 PRCKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKY 374
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 217 EWQSDQAPKTTVIDTASIKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTL 276
E QS + T+V A K K C CG V+ + + V A G +H +CF+C DC +
Sbjct: 91 EQQSLKRSDTSVFPKAVRKVSSSKICASCGQVI-SGQYVRALGNIYHLECFRCHDCNSLV 149
Query: 277 DS 278
S
Sbjct: 150 AS 151
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 89 LKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDC 148
L E ++ + + P+++ K + C CG V + + + A G +H ECF+C DC
Sbjct: 87 LNKEEQQSLKRSDTSVFPKAVRKVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDC 145
Score = 30.7 bits (66), Expect = 0.51
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 427 TEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCH 474
T P +K + + C CG V + + + + +H CF C DC+
Sbjct: 100 TSVFPKAVRKVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDCN 146
Score = 30.7 bits (66), Expect = 0.51
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 338 KAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECH 376
K + C CG V + + A G ++H +CF C +C+
Sbjct: 109 KVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDCN 146
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 107 RSIAKAPPGEG---CPRCGGYVYAAEQMLA-RGRAWHKECFKCGDCMKRLDSTN--CCEG 160
+SI+K+P +G C RCG E ++ G WHK+CF C C K L+ ++ +
Sbjct: 5 KSISKSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQT 64
Query: 161 SDKDIYCKVC 170
SD C C
Sbjct: 65 SDGRPVCSSC 74
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 338 KAPKGQG---CPRCGGMVFAAEQQLA-KGTMWHKKCFNCAECHRPL---DSMLACDGPDK 390
K+P +G C RCG E ++ G MWHK CF C +C + L D ML +
Sbjct: 9 KSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGR 68
Query: 391 EIHCRAC 397
+ C +C
Sbjct: 69 PV-CSSC 74
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 235 KAPPGKG---CPRCGGVVFAAEQVLA-KGREWHRKCFKCRDCTRTLD--SIIACDGPDGE 288
K+P KG C RCG E ++ G WH+ CF C C + L+ + DG
Sbjct: 9 KSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGR 68
Query: 289 VYCKTC 294
C +C
Sbjct: 69 PVCSSC 74
Score = 36.3 bits (80), Expect = 0.010
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 11 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 62
C +CG++ E ++ GG WHK CF C C K L+ ++ +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 35.5 bits (78), Expect = 0.018
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 137 AWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKVC 170
++H+ECF+C DC K++ +N + ++ I+C C
Sbjct: 96 SYHRECFRCHDCRKQIIDSN-FKRDNRTIFCNDC 128
Score = 35.1 bits (77), Expect = 0.024
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 443 CPRCGFPVYAAEQMHSKNGS-WHKRCFSCADCHRSLDSTN--LNDGPNGEIYCRGC 495
C RCG E S G WHK CF C C + L+ ++ L +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 33.5 bits (73), Expect = 0.072
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 462 SWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGC 495
S+H+ CF C DC + + +N N I+C C
Sbjct: 96 SYHRECFRCHDCRKQIIDSNFK-RDNRTIFCNDC 128
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 9 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVC 62
P C C + A R+ +G +H+ CF+C C+K + +N ++C C
Sbjct: 69 PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
Score = 30.3 bits (65), Expect = 0.67
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 262 WHRKCFKCRDCTR-TLDSIIACDGPDGEVYCKTC 294
+HR+CF+C DC + +DS D + ++C C
Sbjct: 97 YHRECFRCHDCRKQIIDSNFKRD--NRTIFCNDC 128
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 365 WHKKCFNCAECHRP-LDSMLACDGPDKEIHCRAC 397
+H++CF C +C + +DS D ++ I C C
Sbjct: 97 YHRECFRCHDCRKQIIDSNFKRD--NRTIFCNDC 128
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 11 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSE--HEGELYCKVCH 63
C CG A ++ ++ W K C CGL + + CSE G C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.5 bits (68), Expect = 0.29
Identities = 41/174 (23%), Positives = 59/174 (33%), Gaps = 24/174 (13%)
Query: 1 MPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 60
+P P+C CG++ + A E G + C+ C Q ++ C+E + E C
Sbjct: 9 VPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTCY 61
Query: 61 VC----HARKFXXXXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPGE 116
C H + C H+ A RTNG R
Sbjct: 62 ACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHI----ARDCRTNGQQSGGR-FGGHRSNM 116
Query: 117 GCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKVC 170
C CG Y + AR +C+ CG R S C + SD + C C
Sbjct: 117 NCYACGSYGHQ-----ARDCTMGVKCYSCGKIGHR--SFECQQASDGQL-CYKC 162
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 473 CHRSLDSTNLNDGPNGEIYCRGCYGR 498
CH S L D PNGE +C C R
Sbjct: 263 CHEPYISDELLDSPNGEWFCDDCIRR 288
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 460 NGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCY 496
N ++ +CF+CA R+L+ N+ P C+ CY
Sbjct: 551 NDTYFGQCFACAVVKRTLERNNITASPE----CQQCY 583
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 361 KGTMWHKKCFNCAECHR 377
KGT H+K +C ECHR
Sbjct: 11 KGTKRHRKITSCRECHR 27
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 407 FGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAA 438
F Y H P L+ T PT T+T+QL +G +A
Sbjct: 339 FTYKHPPVLI-TRRTPTKTHTKQLSSSGNVSA 369
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 30 KWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 63
K+H C CG C+ +S E+ ++CK C+
Sbjct: 65 KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 449 PVYAAEQMHSKNGSWHKRCFSCA-DCHRSLDSTNL 482
P+YA +GS + C+SC+ CH D +L
Sbjct: 45 PLYACLTCQKASGSLNAVCYSCSISCHADHDLVDL 79
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.138 0.477
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,441
Number of Sequences: 5004
Number of extensions: 96987
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 44
length of query: 517
length of database: 2,362,478
effective HSP length: 76
effective length of query: 441
effective length of database: 1,982,174
effective search space: 874138734
effective search space used: 874138734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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