GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001202-TA|BGIBMGA001202-PA|IPR001781|LIM, zinc-binding
         (517 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302657-1|CAC35522.1|  115|Anopheles gambiae gSG6 protein protein.    25   4.9  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    25   6.5  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   6.5  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    25   6.5  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   8.5  

>AJ302657-1|CAC35522.1|  115|Anopheles gambiae gSG6 protein
          protein.
          Length = 115

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 45 LDSTNCSEHEGELYCKVCHARKF 67
          LD T  +  +GE +C +C  R F
Sbjct: 43 LDCTRVATFKGERFCTLCDTRHF 65


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 410 GHAPTLVSTDSEPT--VTYTEQLPFTGQK 436
           GHA T+++TD EP   V     + F+G++
Sbjct: 406 GHALTVIATDGEPVHPVQVNTIISFSGER 434


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 14  CGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGEL 57
           C KS+Y A E  AG   +H +     +  ++L   N  +  GE+
Sbjct: 543 CDKSIYTAVEVTAGNRLFHHIVESDRVGTQILKEMNKQKLPGEV 586


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 144 KCGDCMKRLDSTNCCEGSDKDIYCKVC 170
           +C  C++R  +T  C G D+   C  C
Sbjct: 290 RCFRCLERGHTTADCAGEDRSSLCLHC 316


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 242 CPRCGGVVFAAEQVL 256
           CPRC GVV   E V+
Sbjct: 956 CPRCPGVVEGVEHVM 970


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.138    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,012
Number of Sequences: 2123
Number of extensions: 28514
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 8
length of query: 517
length of database: 516,269
effective HSP length: 67
effective length of query: 450
effective length of database: 374,028
effective search space: 168312600
effective search space used: 168312600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)