Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001202-TA|BGIBMGA001202-PA|IPR001781|LIM, zinc-binding
(517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 74 2e-13
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 71 2e-12
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 68 2e-11
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 65 9e-11
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 62 7e-10
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 62 1e-09
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 38 0.016
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 37 0.037
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 35 0.11
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 34 0.20
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 34 0.26
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 32 0.80
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 32 1.1
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot... 31 1.4
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 31 1.4
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 31 1.8
At5g47225.1 68418.m05823 hypothetical protein 31 2.4
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 31 2.4
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta... 31 2.4
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 30 4.3
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 29 5.6
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar... 29 7.4
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar... 29 7.4
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin... 29 9.8
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 29 9.8
At1g64500.1 68414.m07312 glutaredoxin family protein 29 9.8
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 74.1 bits (174), Expect = 2e-13
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 242 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYGKKWGP 301
C C V+ + + +G +H+ CF+C C TL I DG +YCKT + + +
Sbjct: 11 CKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTL-VICNYSSMDGVLYCKTHFEQLFKE 69
Query: 302 HGYGFACGSGFLQTDGLTEEEISASRPFYNPD-TTSIKAPKGQGCPRCGGMVFAAEQQLA 360
G F S QT G TE+ A++ P+ +S + C C V+ E+
Sbjct: 70 SG-NF---SKNFQTAGKTEKSNDATKA---PNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122
Query: 361 KGTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKGFGYGH 411
+G +HK CF CA PL S A DG ++C+ +++LF KG Y H
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDG---VLYCKVHFSQLFLEKG-NYNH 171
Score = 68.9 bits (161), Expect = 8e-12
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 69
KC C K+VY + G+ +HK CF+C C L N S +G LYCK H +
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKT-HFEQ--- 65
Query: 70 XXXXXXXXXXCLSMDTGDHLKGENAGG--VRTNGACLEPRSIAKAPPG--EGCPRCGGYV 125
L ++G+ K G ++N A P ++ G + C C V
Sbjct: 66 -----------LFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTV 114
Query: 126 YAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKV 169
Y E+M G ++HK CF+C L ++ D +YCKV
Sbjct: 115 YPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYA-ALDGVLYCKV 157
Score = 59.7 bits (138), Expect = 5e-09
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 5/161 (3%)
Query: 345 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 404
C C V+ + +G +HK CF C+ C+ L + D ++C+ + +LF
Sbjct: 11 CKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTL-VICNYSSMDGVLYCKTHFEQLFKE 69
Query: 405 KGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWH 464
G + T T+ T + + + C C VY E+M + S+H
Sbjct: 70 SGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDK-CAACKKTVYPLEKMTMEGESYH 128
Query: 465 KRCFSCADCHRSLDSTNLNDGP-NGEIYCRGCYGRNFGPKG 504
K CF CA H T+ + +G +YC+ + + F KG
Sbjct: 129 KTCFRCA--HSGCPLTHSSYAALDGVLYCKVHFSQLFLEKG 167
Score = 45.6 bits (103), Expect = 8e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 67
KC C K+VY E+ G +HK CF+C L ++ + +G LYCKV ++ F
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLF 163
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 70.5 bits (165), Expect = 2e-12
Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 14/162 (8%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 69
KC C K+VY ++ A +HK CF+C C+ L +N + EG LYC+ + F
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNFKR 68
Query: 70 XXXXXXXXXXCLSMDTGDH-LKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAA 128
+ D L+GE G + + R E C C VY
Sbjct: 69 TGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTR--------EKCVGCDKTVYPI 120
Query: 129 EQMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCK 168
E++ G +HK CFKC G C + EG +YCK
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGK---LYCK 159
Score = 58.8 bits (136), Expect = 8e-09
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 8/167 (4%)
Query: 242 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYGKKWGP 301
C C V+ +++ A R +H+ CF+C C TL + + +G +YC+ + + +
Sbjct: 10 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTL-KLSNYNSFEGVLYCRPHFDQNFKR 68
Query: 302 HGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAK 361
G G + G + + RP +++ + C C V+ E+
Sbjct: 69 TGSLEKSFEGTPKI-GKPDRPLEGERP-AGTKVSNMFGGTREKCVGCDKTVYPIEKVSVN 126
Query: 362 GTMWHKKCFNCAE--CHRPLDSMLACDGPDKEIHCRACYAKLFGPKG 406
GT++HK CF C C + +A +G +++C+ + +L KG
Sbjct: 127 GTLYHKSCFKCTHGGCTISPSNYIAHEG---KLYCKHHHIQLIKEKG 170
Score = 50.8 bits (116), Expect = 2e-06
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 63
KC C K+VY E+ G +HK CFKC + +N HEG+LYCK H
Sbjct: 109 KCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHH 162
Score = 47.2 bits (107), Expect = 3e-05
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 437 AAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCY 496
A Q C C VY +++ + N +HK CF C C +L +N N G +YCR +
Sbjct: 4 AGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSF-EGVLYCRPHF 62
Query: 497 GRNFGPKG 504
+NF G
Sbjct: 63 DQNFKRTG 70
Score = 45.2 bits (102), Expect = 1e-04
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 5/154 (3%)
Query: 343 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 402
Q C C V+ ++ A ++HK CF C C L + + + ++CR + + F
Sbjct: 8 QKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTL-KLSNYNSFEGVLYCRPHFDQNF 66
Query: 403 GPKGF---GYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSK 459
G + P + D + + C C VY E++
Sbjct: 67 KRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKVSVN 126
Query: 460 NGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCR 493
+HK CF C ++ +N G++YC+
Sbjct: 127 GTLYHKSCFKCTHGGCTISPSNY-IAHEGKLYCK 159
Score = 37.9 bits (84), Expect = 0.016
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 109 IAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 168
+A A + C C VY +++ A R +HK CF+C C L +N + +YC+
Sbjct: 1 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSN-YNSFEGVLYCR 59
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 67.7 bits (158), Expect = 2e-11
Identities = 51/163 (31%), Positives = 68/163 (41%), Gaps = 18/163 (11%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 69
KC C K+VYA E A G+ +HK CFKC C+ L ++ S EG LYCK + F
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKE 68
Query: 70 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPG--EGCPRCGGYVYA 127
S + ++A T P +A G E C C VY
Sbjct: 69 SG----------SFNKNFQSPAKSA-DKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYP 117
Query: 128 AEQMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCK 168
E++ + +HK CFKC G C + EG +YCK
Sbjct: 118 IEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGI---LYCK 157
Score = 67.3 bits (157), Expect = 2e-11
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 5/164 (3%)
Query: 343 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 402
Q C C V+A E A G +HK CF C C L + + + ++C+ + +LF
Sbjct: 8 QKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL-QLSSYSSMEGVLYCKPHFEQLF 66
Query: 403 GPKG-FGYG-HAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKN 460
G F +P + S P +T T G+ + + C C VY E++ ++
Sbjct: 67 KESGSFNKNFQSPAKSADKSTPELTRTPS-RVAGRFSGTQEKCATCSKTVYPIEKVTVES 125
Query: 461 GSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 504
++HK CF C+ + +N G +YC+ + + F KG
Sbjct: 126 QTYHKSCFKCSHGGCPISPSNY-AALEGILYCKHHFAQLFKEKG 168
Score = 56.8 bits (131), Expect = 3e-08
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 242 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYGKKWGP 301
C C V+A E + A G +H+ CFKC C L + + +G +YCK + + +
Sbjct: 10 CKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL-QLSSYSSMEGVLYCKPHFEQLFKE 68
Query: 302 HGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAK 361
G + F Q+ + ++ + + + C C V+ E+ +
Sbjct: 69 SG---SFNKNF-QSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVE 124
Query: 362 GTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKGFGYGH 411
+HK CF C+ P+ + A +G ++C+ +A+LF KG Y H
Sbjct: 125 SQTYHKSCFKCSHGGCPISPSNYAALEG---ILYCKHHFAQLFKEKG-SYNH 172
Score = 44.8 bits (101), Expect = 1e-04
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 67
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 164
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 65.3 bits (152), Expect = 9e-11
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 13/161 (8%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 69
KC C K+VY E A G+ +HK CFKC C+ L +N S EG +YC+ + F
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKE 68
Query: 70 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAAE 129
T N R G + + C C VY E
Sbjct: 69 SGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMF--------SGTQDKCATCTKTVYPIE 120
Query: 130 QMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCK 168
++ + +HK CFKC G C + EG +YCK
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGI---LYCK 158
Score = 59.7 bits (138), Expect = 5e-09
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 4/164 (2%)
Query: 343 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 402
Q C C V+ E A G +HK CF C+ C L + + ++CR + +LF
Sbjct: 8 QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRL-QLSNYSSMEGVVYCRPHFEQLF 66
Query: 403 GPKG-FGYG-HAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKN 460
G F +P TD G + C C VY E++ ++
Sbjct: 67 KESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTVES 126
Query: 461 GSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 504
+HK CF C+ + +N G +YC+ + + F KG
Sbjct: 127 QCYHKSCFKCSHGGCPISPSNY-AALEGILYCKHHFAQLFKEKG 169
Score = 52.8 bits (121), Expect = 5e-07
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 242 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYG---KK 298
C C V+ E + A G +H+ CFKC C L + +G VYC+ + K+
Sbjct: 10 CRACEKTVYPVELLSADGISYHKACFKCSHCKSRL-QLSNYSSMEGVVYCRPHFEQLFKE 68
Query: 299 WGPHGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQ 358
G F + L E + SR + + C C V+ E+
Sbjct: 69 SGSFSKNFQSPAKPLTDKPTPELNRTPSR------LAGMFSGTQDKCATCTKTVYPIEKV 122
Query: 359 LAKGTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKGFGYGH 411
+ +HK CF C+ P+ + A +G ++C+ +A+LF KG Y H
Sbjct: 123 TVESQCYHKSCFKCSHGGCPISPSNYAALEG---ILYCKHHFAQLFKEKG-SYNH 173
Score = 43.6 bits (98), Expect = 3e-04
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 430 LPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGE 489
+ FTG + Q C C VY E + + S+HK CF C+ C L +N + G
Sbjct: 1 MSFTGTQ----QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYS-SMEGV 55
Query: 490 IYCRGCYGRNFGPKG 504
+YCR + + F G
Sbjct: 56 VYCRPHFEQLFKESG 70
Score = 43.2 bits (97), Expect = 4e-04
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 67
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 108 KCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 165
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 62.5 bits (145), Expect = 7e-10
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 69
KC C K+VY + G+ +HK CF+C C+ L +N S +G LYCK H +
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT-HFEQ--- 64
Query: 70 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPG--EGCPRCGGYVYA 127
L ++G+ K G P I+ G + C C VY
Sbjct: 65 -----------LFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYP 113
Query: 128 AEQMLARGRAWHKECFKC--GDC 148
E++ G +HK CF+C G C
Sbjct: 114 LEKIQMEGECFHKTCFRCAHGGC 136
Score = 59.7 bits (138), Expect = 5e-09
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 11/170 (6%)
Query: 242 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYGKKWGP 301
C C V+ + + +G +H+ CF+C C TL + DG +YCKT + + +
Sbjct: 10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTL-QMSNYSSMDGVLYCKTHFEQLFKE 68
Query: 302 HGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAK 361
G F+ F G TE+ P +SI C C V+ E+ +
Sbjct: 69 SG-NFS--KNF--QPGKTEKPELTRTP---SKISSIFCGTQDKCAACEKTVYPLEKIQME 120
Query: 362 GTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFGYGH 411
G +HK CF CA L + + D ++CR + +LF KG Y H
Sbjct: 121 GECFHKTCFRCAHGGCTL-THSSYASLDSVLYCRHHFNQLFMEKG-NYAH 168
Score = 55.6 bits (128), Expect = 7e-08
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 7/161 (4%)
Query: 345 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 404
C C V+ + +G +HK CF C C L M D ++C+ + +LF
Sbjct: 10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQ-MSNYSSMDGVLYCKTHFEQLFKE 68
Query: 405 KG-FGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKGQGCPRCGFPVYAAEQMHSKNGSW 463
G F P +P +T T + C C VY E++ + +
Sbjct: 69 SGNFSKNFQP---GKTEKPELTRTPS-KISSIFCGTQDKCAACEKTVYPLEKIQMEGECF 124
Query: 464 HKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKG 504
HK CF CA +L ++ + +YCR + + F KG
Sbjct: 125 HKTCFRCAHGGCTLTHSSY-ASLDSVLYCRHHFNQLFMEKG 164
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 118 CPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 168
C C VY + + G +HK CF+C C L +N D +YCK
Sbjct: 10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSN-YSSMDGVLYCK 59
Score = 36.7 bits (81), Expect = 0.037
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 60
KC C K+VY E+ G +HK CF+C L ++ + + LYC+
Sbjct: 103 KCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCR 153
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 61.7 bits (143), Expect = 1e-09
Identities = 47/164 (28%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 10 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 69
KC C K+VY + G +HK CF+C C+ L +N S +G LYCK + F
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLFKE 68
Query: 70 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPG--EGCPRCGGYVYA 127
+ DHL RT P ++ G + C C VY
Sbjct: 69 SGNYSKNFQAGKTEKPNDHL-------TRT------PSKLSSFFSGTQDKCATCKKTVYP 115
Query: 128 AEQMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCKV 169
E++ G ++HK CF+C C S G +YCKV
Sbjct: 116 LEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGV---LYCKV 156
Score = 61.7 bits (143), Expect = 1e-09
Identities = 49/175 (28%), Positives = 71/175 (40%), Gaps = 19/175 (10%)
Query: 242 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIACDGPDGEVYCKTCYG---KK 298
C C V+ + + +G +H+ CF+C C TL I DG +YCK + K+
Sbjct: 10 CKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTL-VISNYSSMDGVLYCKPHFEQLFKE 68
Query: 299 WGPHGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQ 358
G + F G D LT S F T K C C V+ E+
Sbjct: 69 SGNYSKNFQAGKTEKPNDHLTRTPSKLSSFF---SGTQDK------CATCKKTVYPLEKV 119
Query: 359 LAKGTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKGFGYGH 411
+G +HK CF C PL S + +G ++C+ + +LF KG Y H
Sbjct: 120 TMEGESYHKTCFRCTHSGCPLTHSSYASLNG---VLYCKVHFNQLFLEKG-SYNH 170
Score = 55.2 bits (127), Expect = 1e-07
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 9/163 (5%)
Query: 345 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 404
C C V+ + +G +HK CF C C L + D ++C+ + +LF
Sbjct: 10 CKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTL-VISNYSSMDGVLYCKPHFEQLFKE 68
Query: 405 KGFGYGHAPTLVSTDSEPTVTYTEQLPFTGQKAAKG--QGCPRCGFPVYAAEQMHSKNGS 462
G ++ + +E + + P G C C VY E++ + S
Sbjct: 69 SG---NYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVTMEGES 125
Query: 463 WHKRCFSCADCHRSLDSTNLNDGP-NGEIYCRGCYGRNFGPKG 504
+HK CF C H T+ + NG +YC+ + + F KG
Sbjct: 126 YHKTCFRCT--HSGCPLTHSSYASLNGVLYCKVHFNQLFLEKG 166
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 37.9 bits (84), Expect = 0.016
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 363 TMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFGYGHAPTLVSTDSEP 422
++WH +CF C C +P+ + H +ACY + + PK H + T+
Sbjct: 190 SLWHPECFRCYGCSQPISEYEFSTSGNYPFH-KACYRERYHPKCDVCSH---FIPTNHAG 245
Query: 423 TVTYTEQLPFTGQK---AAKGQGCPRCGFPVYAAEQMHSKNGSW------HKRCFSCAD 472
+ Y PF QK + + PRC + E+M +N + K C C D
Sbjct: 246 LIEYRAH-PFWVQKYCPSHEHDATPRC----CSCERMEPRNTRYVELNDGRKLCLECLD 299
Score = 35.9 bits (79), Expect = 0.065
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 443 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGP 502
C C + ++ N WH CF C C + + + N + + CY + P
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFH-KACYRERYHP 230
Query: 503 K 503
K
Sbjct: 231 K 231
Score = 32.3 bits (70), Expect = 0.80
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 88 HLKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGD 147
H+ G G V NG PR I C C + + WH ECF+C
Sbjct: 144 HMYG--GGNVYANGDIYYPRPITFQMDFRICAGCNMEIGHGRFLNCLNSLWHPECFRCYG 201
Query: 148 C 148
C
Sbjct: 202 C 202
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 36.7 bits (81), Expect = 0.037
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 348 CGGMVFAAEQQLAK---GTMWHKKCFNCAECHRPL 379
CGG FA E + G +WH CF C CH+P+
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
Score = 33.1 bits (72), Expect = 0.46
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 443 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSL---DSTNLNDGPNGEIYCRGCYGR 498
C C F V ++ WH CF C CH+ + D N G+ + + CY R
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFH-KSCYER 343
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 245 CGGVVFAAEQ---VLAKGREWHRKCFKCRDCTRTL 276
CGG FA E V G WH CF CR C + +
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 35.1 bits (77), Expect = 0.11
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query: 237 PPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTR--TLDSIIACDGPDGEVYCKTC 294
PP C C + + A G WH +CF C C ++ I G +Y K C
Sbjct: 1235 PPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG----MYHKPC 1290
Query: 295 YGKKWGPHGYGFACGSGFLQT-DGLTEEEISASRPFYNPDTTSIKAPKGQGCPRC 348
Y + P+ Y C +T +GL E PF+ T + G G P+C
Sbjct: 1291 YKELRHPNCY--VCEKKIPRTAEGLKYHE----HPFWM--ETYCPSHDGDGTPKC 1337
Score = 33.1 bits (72), Expect = 0.46
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 8 NPKCPKCGKSVYAAEERV---AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 63
NP KC A E+ + A G WH CF C C++ + S+ G +Y K C+
Sbjct: 1234 NPPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG-MYHKPCY 1291
Score = 32.3 bits (70), Expect = 0.80
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 345 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 404
C C + A G++WH +CF C C P+ D + ++ + CY +L P
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISD--LRGMYHKPCYKELRHP 1297
Score = 29.9 bits (64), Expect = 4.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 113 PPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDC 148
PP C C + + A G WH +CF C C
Sbjct: 1235 PPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRC 1270
Score = 29.1 bits (62), Expect = 7.4
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 443 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPNGEIYCRGCY 496
C C + +++ WH +CF C C + ++D +Y + CY
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG--MYHKPCY 1291
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 34.3 bits (75), Expect = 0.20
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 362 GTMWHKKCFNCAECHRP-LDSMLACDGPDKEIHCRACYAKLFGPKGFGYGHAPTLVSTDS 420
G +WH +CF C C +P +D + G ++ H + CY + PK + T+
Sbjct: 2 GGVWHPECFCCNACDKPIIDYEFSMSG-NRPYH-KLCYKEQHHPK---CDVCHNFIPTNP 56
Query: 421 EPTVTYTEQLPFTGQK---AAKGQGCPRCGFPVYAAEQMHSKNGSW------HKRCFSCA 471
+ Y PF QK + + G PRC + E+M K+ + K C C
Sbjct: 57 AGLIEYRAH-PFWMQKYCPSHERDGTPRC----CSCERMEPKDTKYLILDDGRKLCLECL 111
Query: 472 D 472
D
Sbjct: 112 D 112
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 27 GGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 63
GG+ WH CF C C K + S Y K+C+
Sbjct: 2 GGV-WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCY 37
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 33.9 bits (74), Expect = 0.26
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 237 PPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTL 276
PP C C V E V G WH CF CR C + +
Sbjct: 342 PPLSMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPI 381
Score = 32.7 bits (71), Expect = 0.60
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 345 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL 379
C C V E G +WH CF C C +P+
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPI 381
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 113 PPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMK 150
PP C C V E + G WH CF C C K
Sbjct: 342 PPLSMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDK 379
Score = 29.9 bits (64), Expect = 4.3
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 5 PADNPKCPKCG--KSVYAAEERV-AGGLKWHKMCFKCGLCQKLLDSTNCSEHEG------ 55
P NP CG S EE V G+ WH CF C C K + H
Sbjct: 338 PEVNPPLSMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELENHVSNSRGKF 397
Query: 56 -----ELYCKVCHARK 66
E YC VC +K
Sbjct: 398 HKSCYERYCYVCKEKK 413
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 32.3 bits (70), Expect = 0.80
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 238 PGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTL 276
P C C + V A G WH +CF CR C + +
Sbjct: 197 PHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPI 235
Score = 32.3 bits (70), Expect = 0.80
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 11 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHE--GELYC 59
C C ++ A G+ WH CF C C K + EH E YC
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC 251
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 345 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL 379
C C + A G WH +CF C C +P+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPI 235
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 443 CPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTNLNDGPN-GEIYC 492
C C + +H+ +WH CF C C + + + P E YC
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC 251
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 114 PGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMK 150
P C C + + A G WH ECF C C K
Sbjct: 197 PHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDK 233
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 31.9 bits (69), Expect = 1.1
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 34 MCFKCGLCQKL---LDSTNCSEHEGELYCKVCHARKFXXXXXXXXXXXXCLSMDTGDHLK 90
MC KC + Q + + +CS G+ YCK+C K C G L
Sbjct: 2 MCMKCMIIQPVGASCSNISCSSSMGKYYCKIC---KLFDDDREIYHCPYCNLCRLGKGLS 58
Query: 91 GENAGGVRTNGACLEPRSIAKAPPGE-----GCPRCGGYVYAAE---QMLARGRAWHKEC 142
+ ++ N AC+ R I + E CP C Y++ + + L G H C
Sbjct: 59 IDYFHCMKCN-ACMS-RLIVEHVCREKCLEDNCPICHEYIFTSNSPVKALPCGHVMHSTC 116
Query: 143 FKCGDC 148
F+ C
Sbjct: 117 FQEYTC 122
>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
similar to Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
contains Pfam profile PF01369: Sec7 domain
Length = 1698
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 344 GCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLA-CDGPD 389
G RCG ++ + ++ K W K F + C LD + A D PD
Sbjct: 9 GATRCGRVIGPSLDKIIKNAAWRKHTFLVSACKSVLDKLEALSDSPD 55
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 241 GCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTRTLDSIIA-CDGPD 286
G RCG V+ + + K W + F C LD + A D PD
Sbjct: 9 GATRCGRVIGPSLDKIIKNAAWRKHTFLVSACKSVLDKLEALSDSPD 55
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 442 GCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCHRSLDSTN-LNDGPN 487
G RCG + + KN +W K F + C LD L+D P+
Sbjct: 9 GATRCGRVIGPSLDKIIKNAAWRKHTFLVSACKSVLDKLEALSDSPD 55
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 31.5 bits (68), Expect = 1.4
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 34 MCFKCGLCQKL---LDSTNCSEHEGELYCKVCHARKFXXXXXXXXXXXXCLSMDTGDHLK 90
MC KC L Q + +T+C G+ +CK+C K C G L
Sbjct: 62 MCMKCLLIQPIGANCSNTSCKSSMGKYFCKIC---KLYDDERKIYHCPYCNLCRVGKGLG 118
Query: 91 GENAGGVRTNGACLEPRSIAKAPPGE-----GCPRCGGYVYAAE---QMLARGRAWHKEC 142
+ ++ N AC+ R++ + E CP C Y++ + + L G H C
Sbjct: 119 IDYFHCMKCN-ACMS-RTLVEHVCREKCLEDNCPICHEYIFTSSSPVKALPCGHLMHSTC 176
Query: 143 FKCGDC 148
F+ C
Sbjct: 177 FQEYTC 182
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 31.1 bits (67), Expect = 1.8
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 321 EEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLD 380
E+ S +S K CP C + +A + H C CAE P+D
Sbjct: 197 EDNSEEEETKTKSASSSSYDKSYICPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVD 256
Query: 381 SM-LACDGPDKE 391
+ L CD P K+
Sbjct: 257 KVCLVCDKPCKD 268
>At5g47225.1 68418.m05823 hypothetical protein
Length = 351
Score = 30.7 bits (66), Expect = 2.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 324 SASRPFYNPDTTSIKAPKGQGCPRCG 349
S P P T++KA + CPRCG
Sbjct: 52 SCDHPLQGPSVTALKAQADKKCPRCG 77
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 119 PRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKVC 170
PRC L G +H C CGD + D + C + Y KVC
Sbjct: 72 PRCRSMPLTRPHTLREGNDYHSSCDTCGDEVSENDRSYHCPTCEM-CYHKVC 122
>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 GI:6069485 from [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 496
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 11 CPKCGKS-VYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 63
C KCG S ++ R +W C +CG + D EH+G L + H
Sbjct: 335 CTKCGNSHIWVCTNRSKAKARW---CQECGQYHQAKDGDGWVEHKGTLVFEKAH 385
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 29.9 bits (64), Expect = 4.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 98 RTNGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDS-TN 156
RT + P + PGEGC C + A ++ W + C C +R S N
Sbjct: 56 RTGSSTRHPLRVPGMKPGEGCFICHSKTHIA-KLCPEKSEWERNKI-CLQCRRRGHSLKN 113
Query: 157 CCEGSDKDIYCKVC 170
C E +++ K+C
Sbjct: 114 CPEKNNESSEKKLC 127
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 113 PPGEGCPRCGGYVYAAEQMLARGRAWHK-ECFKCGDCMKRLDSTN 156
PP C +CG Y + ++HK EC + + M+R+D N
Sbjct: 15 PPTRRCGQCGAVAYCSVSHQISHWSYHKEECERLEEQMRRVDLLN 59
>At5g59400.2 68418.m07444 expressed protein predicted protein,
Arabidopsis thaliana
Length = 301
Score = 29.1 bits (62), Expect = 7.4
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 437 AAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCH 474
A KG CP CG V+A + N S HK ADCH
Sbjct: 225 ALKGD-CPNCGEEVFAFVRSDQSNRSAHK-----ADCH 256
>At5g59400.1 68418.m07443 expressed protein predicted protein,
Arabidopsis thaliana
Length = 299
Score = 29.1 bits (62), Expect = 7.4
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 437 AAKGQGCPRCGFPVYAAEQMHSKNGSWHKRCFSCADCH 474
A KG CP CG V+A + N S HK ADCH
Sbjct: 225 ALKGD-CPNCGEEVFAFVRSDQSNRSAHK-----ADCH 256
>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 367
Score = 28.7 bits (61), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 259 GREWHRKCFKCRDCTRTLDSIIA 281
G +WH++ CR C R L S+IA
Sbjct: 212 GSKWHQQLDFCRKCERLLISVIA 234
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 111 KAPPGEGCPRCGGYVYAAEQMLARGRAW---HKECFKCG 146
K P GC +CGG + A RG C+KCG
Sbjct: 248 KRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCG 286
>At1g64500.1 68414.m07312 glutaredoxin family protein
Length = 368
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 242 CPRCGGVVFAAEQVLAKGREWHRKCFKCRD 271
C CGG A AKG W R C KC +
Sbjct: 328 CFECGGSCKVAAVGAAKGERWER-CVKCNE 356
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.138 0.477
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,702,884
Number of Sequences: 28952
Number of extensions: 610188
Number of successful extensions: 1425
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 123
length of query: 517
length of database: 12,070,560
effective HSP length: 84
effective length of query: 433
effective length of database: 9,638,592
effective search space: 4173510336
effective search space used: 4173510336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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