GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001201-TA|BGIBMGA001201-PA|IPR003247|Calponin-like
actin-binding subtype, IPR001715|Calponin-like actin-binding,
IPR000557|Calponin repeat, IPR003096|SM22/calponin
         (184 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   6.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   6.1  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 147 DEVLKAGQTVIGLQAGSNK 165
           DE+   GQT++G+     K
Sbjct: 280 DEICNEGQTILGISYSLEK 298


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 147 DEVLKAGQTVIGLQAGSNK 165
           DE+   GQT++G+     K
Sbjct: 280 DEICNEGQTILGISYSLEK 298



 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 72  QFKMMENITNFQSAIKAYGVPDIDVFQTVDL 102
           QF+M +N TN       + +P     + ++L
Sbjct: 348 QFEMTQNSTNINFVSTFFKIPFYSTLRPINL 378


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,201
Number of Sequences: 317
Number of extensions: 1741
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 184
length of database: 114,650
effective HSP length: 53
effective length of query: 131
effective length of database: 97,849
effective search space: 12818219
effective search space used: 12818219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)